Zfyve19 (zinc finger FYVE-type containing 19) - Rat Genome Database

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Gene: Zfyve19 (zinc finger FYVE-type containing 19) Heterocephalus glaber
Analyze
Symbol: Zfyve19
Name: zinc finger FYVE-type containing 19
RGD ID: 18932745
Description: ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (inferred); INVOLVED IN midbody abscission (ortholog); negative regulation of cytokinesis (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); mosaic variegated aneuploidy syndrome 1 (ortholog); FOUND IN centrosome (inferred); cleavage furrow (inferred); midbody (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: abscission/NoCut checkpoint regulator
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248048,056,529 - 8,063,160 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248048,056,391 - 8,063,483 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zfyve19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248048,056,529 - 8,063,160 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248048,056,391 - 8,063,483 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZFYVE19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,807,089 - 40,815,084 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,807,086 - 40,815,084 (+)EnsemblGRCh38hg38GRCh38
GRCh371541,099,287 - 41,107,282 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,886,566 - 38,894,059 (+)NCBINCBI36Build 36hg18NCBI36
Build 341538,886,723 - 38,894,059NCBI
Celera1517,867,170 - 17,874,666 (+)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,947,391 - 17,955,209 (+)NCBIHuRef
CHM1_11541,219,288 - 41,227,088 (+)NCBICHM1_1
T2T-CHM13v2.01538,613,113 - 38,621,110 (+)NCBIT2T-CHM13v2.0
Zfyve19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,039,088 - 119,047,531 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2119,039,098 - 119,047,530 (+)EnsemblGRCm39 Ensembl
GRCm382119,208,607 - 119,217,050 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,208,617 - 119,217,049 (+)EnsemblGRCm38mm10GRCm38
MGSCv372119,034,456 - 119,042,786 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362118,900,398 - 118,908,490 (+)NCBIMGSCv36mm8
Celera2120,358,842 - 120,367,201 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.97NCBI
Zfyve19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,649,625 - 126,657,812 (+)NCBIGRCr8
mRatBN7.23106,195,779 - 106,203,969 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,195,899 - 106,203,969 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3109,869,190 - 109,877,060 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,464,732 - 118,472,603 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,125,110 - 116,132,980 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03111,013,856 - 111,021,841 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,013,856 - 111,021,841 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03117,564,417 - 117,583,944 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43105,722,207 - 105,730,192 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3105,109,218 - 105,117,203 (+)NCBICelera
Cytogenetic Map3q35NCBI
Zfyve19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554167,672,592 - 7,679,632 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554167,672,499 - 7,679,851 (+)NCBIChiLan1.0ChiLan1.0
ZFYVE19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21630,048,198 - 30,055,226 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11534,199,702 - 34,206,663 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01519,747,606 - 19,755,185 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11537,999,283 - 38,006,744 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1537,999,283 - 38,006,744 (+)Ensemblpanpan1.1panPan2
ZFYVE19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,945,364 - 7,952,751 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,945,407 - 7,952,751 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha308,000,012 - 8,007,396 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0308,073,769 - 8,081,163 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl308,073,781 - 8,083,323 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1307,996,443 - 8,003,825 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0308,104,012 - 8,111,396 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0308,233,304 - 8,240,688 (+)NCBIUU_Cfam_GSD_1.0
Zfyve19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,355,618 - 86,359,269 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364714,203,391 - 4,207,332 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFYVE19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,510,719 - 130,517,216 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,510,718 - 130,517,943 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,668,920 - 145,675,472 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFYVE19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,186,708 - 42,194,750 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2642,184,668 - 42,193,473 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604898,787,370 - 98,794,452 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000015378   ⟹   ENSHGLP00000015223
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248048,056,529 - 8,063,160 (+)Ensembl
RefSeq Acc Id: XM_004861580   ⟹   XP_004861637
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248048,056,394 - 8,063,483 (+)NCBI
RefSeq Acc Id: XM_004861581   ⟹   XP_004861638
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248048,056,396 - 8,063,483 (+)NCBI
RefSeq Acc Id: XM_004861583   ⟹   XP_004861640
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248048,056,606 - 8,063,483 (+)NCBI
RefSeq Acc Id: XM_021241924   ⟹   XP_021097583
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248048,056,392 - 8,063,483 (+)NCBI
RefSeq Acc Id: XR_002388382
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248048,056,391 - 8,063,483 (+)NCBI
RefSeq Acc Id: XR_002388383
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248048,056,394 - 8,063,483 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004861637 (Get FASTA)   NCBI Sequence Viewer  
  XP_004861638 (Get FASTA)   NCBI Sequence Viewer  
  XP_004861640 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097583 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015223
RefSeq Acc Id: XP_021097583   ⟸   XM_021241924
- Peptide Label: isoform X2
- UniProtKB: G5BM00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861637   ⟸   XM_004861580
- Peptide Label: isoform X1
- UniProtKB: G5BM00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861638   ⟸   XM_004861581
- Peptide Label: isoform X3
- UniProtKB: G5BM00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861640   ⟸   XM_004861583
- Peptide Label: isoform X4
- UniProtKB: G5BM00 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000015223   ⟸   ENSHGLT00000015378


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010892 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015378 ENTREZGENE
Gene3D-CATH Zinc/RING finger domain, C3HC4 (zinc finger) UniProtKB/TrEMBL
InterPro Bbox1_ANCHR UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Zfyve19 ENTREZGENE
PANTHER ABSCISSION/NOCUT CHECKPOINT REGULATOR UniProtKB/TrEMBL
  ABSCISSION/NOCUT CHECKPOINT REGULATOR UniProtKB/TrEMBL
Pfam ANCHR-like_BBOX UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  FYVE/PHD zinc finger UniProtKB/TrEMBL
UniProt A0AAX6PWQ5_HETGA UniProtKB/TrEMBL
  A0AAX6PX87_HETGA UniProtKB/TrEMBL
  A0AAX6PYU2_HETGA UniProtKB/TrEMBL
  A0AAX6RMQ0_HETGA UniProtKB/TrEMBL
  G5BM00 ENTREZGENE, UniProtKB/TrEMBL