Trappc6b (trafficking protein particle complex subunit 6B) - Rat Genome Database

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Gene: Trappc6b (trafficking protein particle complex subunit 6B) Heterocephalus glaber
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Symbol: Trappc6b
Name: trafficking protein particle complex subunit 6B (Ensembl:trafficking protein particle complex 6B)
RGD ID: 18930571
Description: INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (inferred); Golgi vesicle transport (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); neurodevelopmental disorder with microcephaly, epilepsy, and brain atrophy (ortholog); FOUND IN cis-Golgi network (inferred); Golgi apparatus (inferred); trans-Golgi network (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: trafficking protein particle complex 6B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248138,600,536 - 8,615,746 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248138,598,451 - 8,615,687 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Trappc6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248138,600,536 - 8,615,746 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248138,598,451 - 8,615,687 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TRAPPC6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381439,147,814 - 39,170,333 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1439,147,811 - 39,170,532 (-)EnsemblGRCh38hg38GRCh38
GRCh371439,617,018 - 39,639,537 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361438,686,766 - 38,709,385 (-)NCBINCBI36Build 36hg18NCBI36
Build 341438,686,767 - 38,709,269NCBI
Celera1419,481,624 - 19,504,242 (-)NCBICelera
Cytogenetic Map14q21.1NCBI
HuRef1419,731,206 - 19,753,818 (-)NCBIHuRef
CHM1_11439,615,619 - 39,638,238 (-)NCBICHM1_1
T2T-CHM13v2.01433,336,495 - 33,359,014 (-)NCBIT2T-CHM13v2.0
Trappc6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391259,089,878 - 59,108,258 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1259,089,878 - 59,108,258 (-)EnsemblGRCm39 Ensembl
GRCm381259,043,092 - 59,061,472 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1259,043,092 - 59,061,472 (-)EnsemblGRCm38mm10GRCm38
MGSCv371260,144,079 - 60,162,448 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361259,961,104 - 59,979,473 (-)NCBIMGSCv36mm8
Celera1260,203,219 - 60,221,577 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1225.99NCBI
Trappc6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8682,475,794 - 82,486,928 (-)NCBIGRCr8
mRatBN7.2676,740,898 - 76,752,035 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl676,740,898 - 76,752,024 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx677,187,064 - 77,198,154 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0677,486,388 - 77,497,478 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0676,913,864 - 76,924,954 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0680,142,126 - 80,153,216 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl680,142,122 - 80,153,231 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0689,667,998 - 89,679,088 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4679,741,788 - 79,752,878 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1679,744,843 - 79,755,885 (-)NCBI
Celera675,501,186 - 75,512,276 (-)NCBICelera
Cytogenetic Map6q23NCBI
Trappc6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540922,117,329 - 22,134,236 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540922,117,329 - 22,131,102 (+)NCBIChiLan1.0ChiLan1.0
TRAPPC6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21540,481,089 - 40,504,302 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11439,697,601 - 39,720,834 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01419,917,745 - 19,940,589 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11438,273,526 - 38,296,231 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1438,273,526 - 38,296,231 (-)Ensemblpanpan1.1panPan2
TRAPPC6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1817,335,060 - 17,350,163 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl817,336,154 - 17,350,000 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha817,146,239 - 17,161,330 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0817,457,294 - 17,472,389 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl817,457,298 - 17,472,272 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1817,144,880 - 17,159,970 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0817,216,547 - 17,231,644 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0817,503,145 - 17,518,233 (-)NCBIUU_Cfam_GSD_1.0
Trappc6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864049,234,099 - 49,252,803 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649412,740,268 - 12,758,662 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649412,740,268 - 12,758,697 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAPPC6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1169,709,558 - 169,722,735 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11169,710,948 - 169,722,782 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21188,414,028 - 188,425,855 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRAPPC6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12415,921,318 - 15,943,926 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2415,922,995 - 15,943,842 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660534,964,767 - 4,987,383 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000007330   ⟹   ENSHGLP00000007245
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248138,600,536 - 8,615,746 (-)Ensembl
RefSeq Acc Id: XM_004862750   ⟹   XP_004862807
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248138,600,455 - 8,615,687 (-)NCBI
RefSeq Acc Id: XM_021242847   ⟹   XP_021098506
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248138,598,451 - 8,615,687 (-)NCBI
RefSeq Acc Id: XM_021242848   ⟹   XP_021098507
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248138,600,323 - 8,615,687 (-)NCBI
RefSeq Acc Id: XM_021242849   ⟹   XP_021098508
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248138,599,567 - 8,615,687 (-)NCBI
RefSeq Acc Id: XM_021242850   ⟹   XP_021098509
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248138,600,455 - 8,615,687 (-)NCBI
RefSeq Acc Id: XR_002388800
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248138,598,451 - 8,615,687 (-)NCBI
RefSeq Acc Id: XR_002388801
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248138,599,567 - 8,615,687 (-)NCBI
RefSeq Acc Id: XR_002388802
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248138,600,324 - 8,615,687 (-)NCBI
RefSeq Acc Id: XP_021098506   ⟸   XM_021242847
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J4L2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098508   ⟸   XM_021242849
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J4L2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098507   ⟸   XM_021242848
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J4L2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098509   ⟸   XM_021242850
- Peptide Label: isoform X2
- UniProtKB: A0AAX6RPT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004862807   ⟸   XM_004862750
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J4L2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000007245   ⟸   ENSHGLT00000007330


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005276 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000007330 ENTREZGENE
  ENSHGLT00000054607 UniProtKB/TrEMBL
Gene3D-CATH Trafficking protein particle complex subunit 3 UniProtKB/TrEMBL
InterPro NO_sig/Golgi_transp_ligand-bd UniProtKB/TrEMBL
  TRAPP_component UniProtKB/TrEMBL
  TRAPPC6/Trs33 UniProtKB/TrEMBL
KEGG Report hgl:101716339 UniProtKB/TrEMBL
NCBI Gene Trappc6b ENTREZGENE
PANTHER PTHR12817 UniProtKB/TrEMBL
  TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B UniProtKB/TrEMBL
Pfam TRAPP UniProtKB/TrEMBL
Superfamily-SCOP SSF111126 UniProtKB/TrEMBL
UniProt A0A0P6J4L2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RPT6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-16 Trappc6b  trafficking protein particle complex subunit 6B  Trappc6b  trafficking protein particle complex 6B  Symbol and/or name change 5135510 APPROVED