Mfrp (membrane frizzled-related protein) - Rat Genome Database

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Gene: Mfrp (membrane frizzled-related protein) Heterocephalus glaber
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Symbol: Mfrp
Name: membrane frizzled-related protein
RGD ID: 18930471
Description: INVOLVED IN eye photoreceptor cell development (ortholog); retina development in camera-type eye (ortholog); visual perception (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478414,710,042 - 14,714,715 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478414,709,834 - 14,714,927 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Mfrp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478414,710,042 - 14,714,715 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478414,709,834 - 14,714,927 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MFRP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811119,338,942 - 119,346,705 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11119,338,942 - 119,346,705 (-)EnsemblGRCh38hg38GRCh38
GRCh3711119,209,652 - 119,217,415 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611118,716,836 - 118,722,580 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411118,716,835 - 118,722,580NCBI
Celera11116,370,323 - 116,378,054 (-)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11115,150,343 - 115,158,082 (-)NCBIHuRef
CHM1_111119,096,203 - 119,103,942 (-)NCBICHM1_1
T2T-CHM13v2.011119,359,579 - 119,367,342 (-)NCBIT2T-CHM13v2.0
Mfrp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,013,067 - 44,020,484 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,013,026 - 44,020,484 (+)EnsemblGRCm39 Ensembl
GRCm38944,101,770 - 44,109,187 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,101,729 - 44,109,187 (+)EnsemblGRCm38mm10GRCm38
MGSCv37943,909,853 - 43,917,270 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36943,909,925 - 43,917,270 (+)NCBIMGSCv36mm8
Celera941,359,597 - 41,367,008 (+)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map924.6NCBI
Mfrp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,342,483 - 53,347,696 (+)NCBIGRCr8
mRatBN7.2844,445,636 - 44,450,859 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl844,445,697 - 44,450,859 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx849,943,933 - 49,949,098 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,222,643 - 48,227,808 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,090,263 - 46,095,426 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0848,437,720 - 48,443,421 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,437,918 - 48,443,421 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,053,980 - 47,059,250 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,084,056 - 47,089,218 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,092,971 - 47,097,611 (+)NCBI
Celera844,032,894 - 44,038,056 (+)NCBICelera
Cytogenetic Map8q22NCBI
Mfrp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,421,935 - 20,426,760 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,421,935 - 20,426,760 (-)NCBIChiLan1.0ChiLan1.0
MFRP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29120,046,694 - 120,054,325 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111121,152,657 - 121,157,778 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011114,179,998 - 114,187,716 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111118,107,317 - 118,115,050 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11118,107,317 - 118,115,050 (-)Ensemblpanpan1.1panPan2
MFRP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1514,555,619 - 14,561,577 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl514,556,065 - 14,561,623 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha514,609,393 - 14,614,363 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0514,499,276 - 14,504,240 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl514,499,485 - 14,504,210 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1514,637,560 - 14,642,522 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0514,541,551 - 14,546,518 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0514,581,669 - 14,586,636 (+)NCBIUU_Cfam_GSD_1.0
Mfrp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947101,350,829 - 101,355,821 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365424,272,264 - 4,277,252 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365424,272,250 - 4,277,231 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MFRP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl946,550,315 - 46,556,077 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1946,550,383 - 46,556,305 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2951,584,361 - 51,590,860 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MFRP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,720,520 - 110,728,529 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,720,530 - 110,725,483 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604315,305,601 - 15,314,524 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000023534   ⟹   ENSHGLP00000023317
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478414,710,042 - 14,714,715 (-)Ensembl
RefSeq Acc Id: XM_004856798   ⟹   XP_004856855
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478414,709,834 - 14,714,923 (-)NCBI
RefSeq Acc Id: XR_002386775
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478414,710,288 - 14,714,927 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004856855 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB08807 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000023317
RefSeq Acc Id: XP_004856855   ⟸   XM_004856798
- UniProtKB: G5BHP6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000023317   ⟸   ENSHGLT00000023534


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016623 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000023534 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.2000.10 UniProtKB/TrEMBL
  2.60.120.290 UniProtKB/TrEMBL
  4.10.400.10 UniProtKB/TrEMBL
InterPro CUB_dom UniProtKB/TrEMBL
  Frizzled_dom UniProtKB/TrEMBL
  Frizzled_dom_sf UniProtKB/TrEMBL
  LDL_receptor-like_sf UniProtKB/TrEMBL
  LDLR_class-A_CS UniProtKB/TrEMBL
  LDrepeatLR_classA_rpt UniProtKB/TrEMBL
  Sperma_CUB_dom_sf UniProtKB/TrEMBL
KEGG Report hgl:101711581 UniProtKB/TrEMBL
NCBI Gene Mfrp ENTREZGENE
PANTHER CUB DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  OVOCHYMASE-RELATED UniProtKB/TrEMBL
Pfam CUB UniProtKB/TrEMBL
  Ldl_recept_a UniProtKB/TrEMBL
  PF01392 UniProtKB/TrEMBL
PRINTS LDLRECEPTOR UniProtKB/TrEMBL
PROSITE CUB UniProtKB/TrEMBL
  LDLRA_1 UniProtKB/TrEMBL
  LDLRA_2 UniProtKB/TrEMBL
  PS50038 UniProtKB/TrEMBL
SMART CUB UniProtKB/TrEMBL
  FRI UniProtKB/TrEMBL
  LDLa UniProtKB/TrEMBL
Superfamily-SCOP SSF49854 UniProtKB/TrEMBL
  SSF57424 UniProtKB/TrEMBL
  SSF63501 UniProtKB/TrEMBL
UniProt G5BHP6 ENTREZGENE, UniProtKB/TrEMBL