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Gene: Usp12 (ubiquitin specific peptidase 12) Heterocephalus glaber

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Symbol:

Usp12

Name:

ubiquitin specific peptidase 12

RGD ID:

18929676

Description:

ENCODES a protein that exhibits cysteine-type endopeptidase activity (ortholog); deubiquitinase activity (ortholog); INVOLVED IN protein deubiquitination (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN cytoplasm (ortholog); plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ubiquitin carboxyl-terminal hydrolase 12

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624776	11,301,045 - 11,393,313 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624776	11,300,819 - 11,396,318 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp12	Naked Mole-Rat	protein deubiquitination	acts_upstream_of_or_within	ISO	Usp12 (Mus musculus)	9068941	PMID:26811477	MGI	PMID:26811477
Usp12	Naked Mole-Rat	protein deubiquitination	involved_in	IEA	PANTHER:PTN002539431 and PANTHER:PTN008600492	150520179		TreeGrafter	GO_REF:0000118
Usp12	Naked Mole-Rat	protein deubiquitination	involved_in	IEA	InterPro:IPR001394	150520179		InterPro	GO_REF:0000002
Usp12	Naked Mole-Rat	proteolysis	involved_in	IEA	UniProtKB-KW:KW-0645	150520179		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp12	Naked Mole-Rat	cytoplasm	located_in	ISO	USP12 (Homo sapiens)	9068941	PMID:26811477 and PMID:30466959	UniProt	PMID:26811477 and PMID:30466959
Usp12	Naked Mole-Rat	cytosol	located_in	IEA	PANTHER:PTN002539431 and PANTHER:PTN008600492	150520179		TreeGrafter	GO_REF:0000118
Usp12	Naked Mole-Rat	nucleus	located_in	IEA	PANTHER:PTN002539431 and PANTHER:PTN008600492	150520179		TreeGrafter	GO_REF:0000118
Usp12	Naked Mole-Rat	plasma membrane	located_in	ISO	USP12 (Homo sapiens)	9068941	PMID:30466959	UniProt	PMID:30466959

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp12	Naked Mole-Rat	cysteine-type deubiquitinase activity	enables	IEA	PANTHER:PTN002539431 and PANTHER:PTN008600492	150520179		TreeGrafter	GO_REF:0000118
Usp12	Naked Mole-Rat	cysteine-type deubiquitinase activity	enables	IEA	InterPro:IPR001394 and InterPro:IPR018200	150520179		InterPro	GO_REF:0000002
Usp12	Naked Mole-Rat	cysteine-type endopeptidase activity	enables	ISO	USP12 (Homo sapiens)	9068941	PMID:19075014	UniProt	PMID:19075014
Usp12	Naked Mole-Rat	cysteine-type peptidase activity	enables	IEA	UniProtKB-KW:KW-0788	150520179		UniProt	GO_REF:0000043
Usp12	Naked Mole-Rat	deubiquitinase activity	enables	ISO	Usp12 (Mus musculus)	9068941	PMID:26811477	MGI	PMID:26811477
Usp12	Naked Mole-Rat	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	150520179		UniProt	GO_REF:0000043
Usp12	Naked Mole-Rat	peptidase activity	enables	IEA	UniProtKB-KW:KW-0645	150520179		UniProt	GO_REF:0000043
Usp12	Naked Mole-Rat	protein binding	enables	ISO	UniProtKB:Q8TBZ3	9068941	PMID:19615732 more ...	IntAct	PMID:19615732 more ...
Usp12	Naked Mole-Rat	protein binding	enables	ISO	UniProtKB:Q09019	9068941	PMID:33844468	UniProt	PMID:33844468
Usp12	Naked Mole-Rat	protein binding	enables	ISO	UniProtKB:Q8TAF3	9068941	PMID:19075014 and PMID:27650958	UniProt	PMID:19075014 and PMID:27650958
Usp12	Naked Mole-Rat	protein binding	enables	ISO	UniProtKB:Q8TAF3 and UniProtKB:Q8TBZ3	9068941	PMID:27373336	UniProt	PMID:27373336
Usp12	Naked Mole-Rat	protein binding	enables	ISO	UniProtKB:P27797 more ...	9068941	PMID:32814053	IntAct	PMID:32814053
Usp12	Naked Mole-Rat	protein binding	enables	ISO	UniProtKB:O60346	9068941	PMID:24145035	UniProt	PMID:24145035

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp12	Naked Mole-Rat	histone modification pathway		ISO	USP12 (Homo sapiens)	9068941		RGD	PMID:24647359 and REF_RGD_ID:9479061

PMID:22301074	PMID:30032202

Usp12
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624776	11,301,045 - 11,393,313 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624776	11,300,819 - 11,396,318 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

USP12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	27,066,156 - 27,171,811 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	27,066,156 - 27,171,811 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	27,640,293 - 27,745,948 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	26,540,433 - 26,644,028 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	26,540,437 - 26,644,029	NCBI
Celera	13	8,709,187 - 8,814,916 (-)	NCBI		Celera
Cytogenetic Map	13	q12.13	NCBI
HuRef	13	8,462,522 - 8,512,964 (-)	NCBI		HuRef
CHM1_1	13	27,608,845 - 27,714,492 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	26,286,900 - 26,392,536 (-)	NCBI		T2T-CHM13v2.0

Usp12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	146,671,619 - 146,731,817 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	146,671,619 - 146,731,816 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	146,734,809 - 146,794,956 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	146,734,809 - 146,795,006 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	147,546,388 - 147,606,532 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	147,045,161 - 147,105,305 (-)	NCBI		MGSCv36	mm8
Celera	5	144,724,140 - 144,752,267 (-)	NCBI		Celera
Cytogenetic Map	5	G3	NCBI
cM Map	5	86.0	NCBI

Usp12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	13,423,625 - 13,477,547 (+)	NCBI		GRCr8
mRatBN7.2	12	8,309,845 - 8,363,686 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	8,309,750 - 8,363,656 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	9,111,238 - 9,161,842 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	9,734,421 - 9,785,026 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	8,757,863 - 8,808,472 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	10,037,686 - 10,087,685 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	10,063,117 - 10,087,685 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	12,145,472 - 12,195,185 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	8,757,532 - 8,808,106 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	8,787,433 - 8,839,672 (+)	NCBI
Celera	12	10,126,987 - 10,177,393 (+)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

Usp12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955497	6,524,487 - 6,556,675 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955497	6,524,487 - 6,613,403 (-)	NCBI	ChiLan1.0	ChiLan1.0

USP12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	26,643,372 - 26,769,527 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	17,753,004 - 17,878,242 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	8,334,651 - 8,463,102 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	26,704,822 - 26,755,416 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	26,707,951 - 26,758,019 (-)	Ensembl	panpan1.1		panPan2

USP12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	12,389,360 - 12,477,406 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	12,338,673 - 12,474,362 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	12,452,353 - 12,540,441 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	12,520,683 - 12,608,824 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	12,565,428 - 12,608,828 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	12,411,883 - 12,499,972 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	12,406,487 - 12,494,667 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	12,451,474 - 12,539,361 (+)	NCBI		UU_Cfam_GSD_1.0

Usp12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	173,484,469 - 173,561,737 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	22,392,583 - 22,467,947 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	22,390,418 - 22,467,690 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	4,612,277 - 4,689,432 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	4,612,274 - 4,689,791 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	4,029,964 - 4,070,715 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	6,282,629 - 6,382,797 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666057	37,957,443 - 38,119,969 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_004854815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013075872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021236327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021236329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021236330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01054855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GEBF01005515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSHGLT00000009463 ⟹ ENSHGLP00000009361

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624776	11,301,045 - 11,393,313 (+)	Ensembl

RefSeq Acc Id:

XM_004854815 ⟹ XP_004854872

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624776	11,300,819 - 11,396,318 (+)	NCBI

RefSeq Acc Id:

XM_013075872 ⟹ XP_012931326

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624776	11,327,236 - 11,396,318 (+)	NCBI

RefSeq Acc Id:

XM_021236327 ⟹ XP_021091986

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624776	11,327,240 - 11,396,318 (+)	NCBI

RefSeq Acc Id:

XM_021236329 ⟹ XP_021091988

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624776	11,301,109 - 11,396,318 (+)	NCBI

RefSeq Acc Id:

XM_021236330 ⟹ XP_021091989

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624776	11,327,235 - 11,396,318 (+)	NCBI


Protein RefSeqs	XP_004854872	(Get FASTA)	NCBI Sequence Viewer
	XP_012931326	(Get FASTA)	NCBI Sequence Viewer
	XP_021091986	(Get FASTA)	NCBI Sequence Viewer
	XP_021091988	(Get FASTA)	NCBI Sequence Viewer
	XP_021091989	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSHGLP00000009361
GenBank Protein	JAN98117	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_004854872 ⟸ XM_004854815
- Peptide Label:	isoform X1
- UniProtKB:	A0A0N8ET31 (UniProtKB/TrEMBL), G5ATV6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_021091988 ⟸ XM_021236329
- Peptide Label:	isoform X2
- UniProtKB:	A0AAX6R6S7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_021091989 ⟸ XM_021236330
- Peptide Label:	isoform X2
- UniProtKB:	A0AAX6R6S7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_012931326 ⟸ XM_013075872
- Peptide Label:	isoform X2
- UniProtKB:	A0AAX6R6S7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_021091986 ⟸ XM_021236327
- Peptide Label:	isoform X2
- UniProtKB:	A0AAX6R6S7 (UniProtKB/TrEMBL)

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000006711	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSHGLT00000009463	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	Cysteine proteinases	UniProtKB/TrEMBL
InterPro	Papain-like_cys_pep_sf	UniProtKB/TrEMBL
	Peptidase_C19	UniProtKB/TrEMBL
	Peptidase_C19_UCH	UniProtKB/TrEMBL
	USP_CS	UniProtKB/TrEMBL
	USP_dom	UniProtKB/TrEMBL
KEGG Report	hgl:101717899	UniProtKB/TrEMBL
NCBI Gene	Usp12	ENTREZGENE
PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12	UniProtKB/TrEMBL
Pfam	UCH	UniProtKB/TrEMBL
PROSITE	USP_1	UniProtKB/TrEMBL
	USP_2	UniProtKB/TrEMBL
	USP_3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54001	UniProtKB/TrEMBL
UniProt	A0A0N8ET31	ENTREZGENE, UniProtKB/TrEMBL
	A0AAX6R6S7	ENTREZGENE, UniProtKB/TrEMBL
	G5ATV6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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RGD Manual Annotations