Trip10 (thyroid hormone receptor interactor 10) - Rat Genome Database

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Gene: Trip10 (thyroid hormone receptor interactor 10) Heterocephalus glaber
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Symbol: Trip10
Name: thyroid hormone receptor interactor 10
RGD ID: 18928896
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN epithelial to mesenchymal transition (ortholog); negative regulation of cardiac muscle cell apoptotic process (ortholog); positive regulation of cell growth involved in cardiac muscle cell development (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; insulin signaling pathway; ASSOCIATED WITH Diabetic Nephropathies (ortholog); Huntington's disease (ortholog); mucolipidosis type IV (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cdc42-interacting protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248283,814,153 - 3,824,278 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248283,814,101 - 3,824,279 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Trip10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248283,814,153 - 3,824,278 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248283,814,101 - 3,824,279 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TRIP10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38196,739,680 - 6,751,530 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl196,737,925 - 6,751,530 (+)EnsemblGRCh38hg38GRCh38
GRCh37196,739,691 - 6,751,541 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36196,690,707 - 6,702,529 (+)NCBINCBI36Build 36hg18NCBI36
Build 34196,690,706 - 6,702,528NCBI
Celera196,681,962 - 6,693,779 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef196,502,187 - 6,514,009 (+)NCBIHuRef
CHM1_1196,739,557 - 6,751,380 (+)NCBICHM1_1
T2T-CHM13v2.0196,729,071 - 6,740,925 (+)NCBIT2T-CHM13v2.0
Trip10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,540,227 - 57,570,712 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,556,455 - 57,570,665 (+)EnsemblGRCm39 Ensembl
GRCm381757,233,220 - 57,263,697 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1757,249,455 - 57,263,665 (+)EnsemblGRCm38mm10GRCm38
MGSCv371757,388,874 - 57,402,846 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,934,786 - 56,948,758 (+)NCBIMGSCv36mm8
Celera1761,597,449 - 61,611,415 (+)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.74NCBI
Trip10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr892,219,695 - 2,234,771 (+)NCBIGRCr8
mRatBN7.292,133,085 - 2,147,795 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl92,133,671 - 2,147,799 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx92,561,223 - 2,575,250 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,910,598 - 7,924,631 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,866,455 - 6,880,482 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.099,689,214 - 9,702,353 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl99,689,475 - 9,702,306 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.098,696,542 - 8,709,681 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,374,250 - 6,387,783 (-)NCBICelera
Cytogenetic Map9q11NCBI
Trip10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554952,770,713 - 2,780,568 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554952,770,449 - 2,780,650 (-)NCBIChiLan1.0ChiLan1.0
TRIP10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22011,152,984 - 11,164,846 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11910,379,065 - 10,391,459 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0195,772,225 - 5,784,078 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1196,693,641 - 6,705,399 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl196,693,646 - 6,705,399 (+)Ensemblpanpan1.1panPan2
TRIP10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12053,543,861 - 53,554,421 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2053,544,005 - 53,554,270 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,292,369 - 53,302,748 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,198,358 - 54,208,747 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,198,363 - 54,206,879 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,265,727 - 53,276,104 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,713,719 - 53,724,095 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02053,943,152 - 53,953,544 (-)NCBIUU_Cfam_GSD_1.0
Trip10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118213,790,040 - 213,799,413 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365884,037,511 - 4,044,486 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365884,035,370 - 4,044,751 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIP10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl272,406,505 - 72,416,138 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1272,406,500 - 72,416,146 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2272,685,817 - 72,695,533 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIP10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.166,308,678 - 6,321,141 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl66,308,666 - 6,320,255 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660811,674,967 - 1,686,403 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000008404   ⟹   ENSHGLP00000008315
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248283,814,153 - 3,824,278 (+)Ensembl
RefSeq Acc Id: XM_004865643   ⟹   XP_004865700
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248283,814,101 - 3,824,279 (+)NCBI
RefSeq Acc Id: XM_004865644   ⟹   XP_004865701
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248283,814,101 - 3,824,279 (+)NCBI
RefSeq Acc Id: XM_004865645   ⟹   XP_004865702
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248283,814,101 - 3,824,279 (+)NCBI
RefSeq Acc Id: XM_004865646   ⟹   XP_004865703
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248283,814,101 - 3,824,279 (+)NCBI
RefSeq Acc Id: XM_013065986   ⟹   XP_012921440
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248283,814,101 - 3,824,279 (+)NCBI
RefSeq Acc Id: XM_021244838   ⟹   XP_021100497
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248283,814,101 - 3,824,279 (+)NCBI
RefSeq Acc Id: XM_021244839   ⟹   XP_021100498
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248283,814,101 - 3,824,279 (+)NCBI
RefSeq Acc Id: XP_021100497   ⟸   XM_021244838
- Peptide Label: isoform X1
- UniProtKB: G5C0N7 (UniProtKB/TrEMBL),   A0AAX6RRS0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021100498   ⟸   XM_021244839
- Peptide Label: isoform X2
- UniProtKB: G5C0N7 (UniProtKB/TrEMBL),   A0AAX6RXG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004865700   ⟸   XM_004865643
- Peptide Label: isoform X3
- UniProtKB: G5C0N7 (UniProtKB/TrEMBL),   A0AAX6Q1W6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004865701   ⟸   XM_004865644
- Peptide Label: isoform X4
- UniProtKB: G5C0N7 (UniProtKB/TrEMBL),   A0AAX6Q5Y1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012921440   ⟸   XM_013065986
- Peptide Label: isoform X5
- UniProtKB: G5C0N7 (UniProtKB/TrEMBL),   A0AAX6QJ65 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004865702   ⟸   XM_004865645
- Peptide Label: isoform X6
- UniProtKB: G5C0N7 (UniProtKB/TrEMBL),   A0AAX6Q503 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004865703   ⟸   XM_004865646
- Peptide Label: isoform X7
- UniProtKB: A0A0P6IZ97 (UniProtKB/TrEMBL),   G5C0N7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000008315   ⟸   ENSHGLT00000008404


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006018 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100005910 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000008404 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100085896 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
  6.10.140.470 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/TrEMBL
  DnaK_N UniProtKB/TrEMBL
  F_BAR UniProtKB/TrEMBL
  FCH_dom UniProtKB/TrEMBL
  HR1_rho-bd UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene Trip10 ENTREZGENE
PANTHER FCH AND DOUBLE SH3 DOMAINS PROTEIN UniProtKB/TrEMBL
  PTHR15735:SF17 UniProtKB/TrEMBL
Pfam FCH UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
PROSITE F_BAR UniProtKB/TrEMBL
  REM_1 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART FCH UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/TrEMBL
  SSF109635 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt A0A0P6IZ97 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6Q1W6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6Q503 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6Q5Y1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QJ65 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RRS0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RXG8 ENTREZGENE, UniProtKB/TrEMBL
  G5C0N7 ENTREZGENE, UniProtKB/TrEMBL