Slc16a12 (solute carrier family 16 member 12) - Rat Genome Database

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Gene: Slc16a12 (solute carrier family 16 member 12) Heterocephalus glaber
Analyze
Symbol: Slc16a12
Name: solute carrier family 16 member 12
RGD ID: 18928446
Description: ENCODES a protein that exhibits creatine transmembrane transporter activity (ortholog); uniporter activity (ortholog); INVOLVED IN creatinine metabolic process (ortholog); ASSOCIATED WITH autoimmune lymphoproliferative syndrome (ortholog); cataract (ortholog); cataract 47 (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: monocarboxylate transporter 12; solute carrier family 16, member 12 (monocarboxylic acid transporter 12)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624737312,039 - 365,915 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624737312,039 - 405,432 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc16a12Naked Mole-Ratautoimmune lymphoproliferative syndrome  ISOSLC16A12 (Homo sapiens)8554872ClinVar Annotator: match by term: AUTOIMMUNE LYMPHOPROLIFERATIVE SYNDROME more ...ClinVarPMID:28492532
Slc16a12Naked Mole-Ratcataract  ISOSLC16A12 (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital cataractClinVarPMID:25741868 and PMID:26694549
Slc16a12Naked Mole-Ratcataract 47  ISOSLC16A12 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:17458810 more ...
Slc16a12Naked Mole-Ratcoloboma  ISOSLC16A12 (Homo sapiens)8554872ClinVar Annotator: match by term: Coloboma of eyeClinVarPMID:24281366 more ...
Slc16a12Naked Mole-RatWolman disease  ISOSLC16A12 (Homo sapiens)8554872ClinVar Annotator: match by term: Wolman diseaseClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc16a12Naked Mole-Ratcataract 47  ISOSLC16A12 (Homo sapiens)7240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc16a12Naked Mole-Ratcreatine transmembrane transport involved_inIEAPANTHER:PTN000144725 and PANTHER:PTN000144735150520179 TreeGrafterGO_REF:0000118
Slc16a12Naked Mole-Ratcreatinine metabolic process involved_inISOSlc16a12 (Rattus norvegicus)9068941PMID:34075817UniProtPMID:34075817 and REF_RGD_ID:153298943
Slc16a12Naked Mole-Rattransmembrane transport involved_inIEAInterPro:IPR011701150520179 InterProGO_REF:0000002

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc16a12Naked Mole-Ratbasolateral plasma membrane located_inIEAUniProtKB-SubCell:SL-0026150520179 UniProtGO_REF:0000044
Slc16a12Naked Mole-Ratmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
Slc16a12Naked Mole-Ratplasma membrane located_inISOSLC16A12 (Homo sapiens)9068941 PMID:21778275 more ...UniProtPMID:21778275 more ...

Molecular Function

  

PMID:22301074   PMID:30032202  



Slc16a12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624737312,039 - 365,915 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624737312,039 - 405,432 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC16A12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381089,430,299 - 89,556,704 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1089,430,299 - 89,556,641 (-)EnsemblGRCh38hg38GRCh38
GRCh371091,190,056 - 91,295,351 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361091,180,036 - 91,285,293 (-)NCBINCBI36Build 36hg18NCBI36
Celera1084,936,860 - 85,042,126 (-)NCBICelera
Cytogenetic Map10q23.31NCBI
HuRef1084,824,228 - 84,929,593 (-)NCBIHuRef
CHM1_11091,472,067 - 91,577,412 (-)NCBICHM1_1
T2T-CHM13v2.01090,314,133 - 90,419,429 (-)NCBIT2T-CHM13v2.0
Slc16a12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391934,645,801 - 34,725,223 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1934,645,803 - 34,724,689 (-)EnsemblGRCm39 Ensembl
GRCm381934,668,401 - 34,747,493 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1934,668,403 - 34,747,289 (-)EnsemblGRCm38mm10GRCm38
MGSCv371934,742,896 - 34,821,601 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361934,734,403 - 34,813,108 (-)NCBIMGSCv36mm8
Celera1935,442,689 - 35,521,028 (-)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1929.79NCBI
Slc16a12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81241,597,165 - 241,674,821 (-)NCBIGRCr8
mRatBN7.21232,184,004 - 232,262,170 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,185,907 - 232,262,141 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1240,579,603 - 240,608,453 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01247,498,691 - 247,521,337 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01240,336,893 - 240,359,535 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01252,976,071 - 253,054,500 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1252,976,644 - 253,000,760 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01260,197,556 - 260,275,962 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41238,643,040 - 238,665,699 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11238,807,343 - 238,830,600 (-)NCBI
Celera1229,298,962 - 229,321,612 (-)NCBICelera
Cytogenetic Map1q53NCBI
Slc16a12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554253,509,142 - 3,560,138 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554253,474,814 - 3,560,138 (+)NCBIChiLan1.0ChiLan1.0
SLC16A12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28101,446,803 - 101,481,472 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110101,452,146 - 101,486,786 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01086,155,527 - 86,187,917 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11089,696,148 - 89,727,585 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1089,696,148 - 89,727,585 (-)Ensemblpanpan1.1panPan2
SLC16A12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1284,343,773 - 4,430,653 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl284,345,546 - 4,421,234 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha284,579,217 - 4,664,998 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0284,565,289 - 4,652,174 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl284,567,687 - 4,651,465 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1284,323,134 - 4,402,863 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0284,365,926 - 4,445,342 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0284,501,245 - 4,580,912 (-)NCBIUU_Cfam_GSD_1.0
Slc16a12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721343,114,853 - 43,133,513 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366014,747,489 - 4,763,697 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366014,685,215 - 4,766,116 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC16A12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14101,273,996 - 101,368,132 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114101,273,977 - 101,368,350 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214110,262,470 - 110,354,305 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC16A12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1982,817,476 - 82,917,004 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl982,818,994 - 82,916,837 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604843,493,620 - 43,592,283 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.






Ensembl Acc Id: ENSHGLT00000010329   ⟹   ENSHGLP00000010215
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624737312,039 - 365,915 (-)Ensembl
RefSeq Acc Id: XM_004838481   ⟹   XP_004838538
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624737312,039 - 405,432 (-)NCBI
RefSeq Acc Id: XM_004838483   ⟹   XP_004838540
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624737312,039 - 337,838 (-)NCBI
RefSeq Acc Id: XM_013069841   ⟹   XP_012925295
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624737312,039 - 405,432 (-)NCBI
Protein RefSeqs XP_004838538 (Get FASTA)   NCBI Sequence Viewer  
  XP_004838540 (Get FASTA)   NCBI Sequence Viewer  
  XP_012925295 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010215
RefSeq Acc Id: XP_004838538   ⟸   XM_004838481
- UniProtKB: A0AAX6QT01 (UniProtKB/TrEMBL),   G5B0Z4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012925295   ⟸   XM_013069841
- UniProtKB: A0AAX6QT01 (UniProtKB/TrEMBL),   G5B0Z4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004838540   ⟸   XM_004838483
- UniProtKB: A0AAX6QT01 (UniProtKB/TrEMBL),   G5B0Z4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000010215   ⟸   ENSHGLT00000010329



1 to 16 of 16 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSHGLG00000007331 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010329 ENTREZGENE
Gene3D-CATH MFS general substrate transporter like domains UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Proton-linked_MCT UniProtKB/TrEMBL
NCBI Gene Slc16a12 ENTREZGENE
PANTHER MONOCARBOXYLATE TRANSPORTER UniProtKB/TrEMBL
  MONOCARBOXYLATE TRANSPORTER 12 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
Superfamily-SCOP MFS general substrate transporter UniProtKB/TrEMBL
UniProt A0AAX6QT01 ENTREZGENE, UniProtKB/TrEMBL
  G5B0Z4 ENTREZGENE, UniProtKB/TrEMBL
1 to 16 of 16 rows