Galm (galactose mutarotase) - Rat Genome Database

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Gene: Galm (galactose mutarotase) Heterocephalus glaber
Analyze
Symbol: Galm
Name: galactose mutarotase
RGD ID: 18927366
Description: ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN carbohydrate metabolic process (ortholog); PARTICIPATES IN Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH buphthalmos (ortholog); galactosemia 4 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Aldose 1-epimerase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473820,163,901 - 20,235,256 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473820,164,179 - 20,236,151 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Galm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473820,163,901 - 20,235,256 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473820,164,179 - 20,236,151 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GALM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38238,666,114 - 38,734,765 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl238,666,081 - 38,741,237 (+)EnsemblGRCh38hg38GRCh38
GRCh37238,893,256 - 38,961,907 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36238,746,743 - 38,815,049 (+)NCBINCBI36Build 36hg18NCBI36
Build 34238,804,889 - 38,873,176NCBI
Celera238,734,098 - 38,802,942 (+)NCBICelera
Cytogenetic Map2p22.1NCBI
HuRef238,632,684 - 38,700,744 (+)NCBIHuRef
CHM1_1238,823,545 - 38,892,563 (+)NCBICHM1_1
T2T-CHM13v2.0238,672,993 - 38,743,547 (+)NCBIT2T-CHM13v2.0
Galm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391780,434,886 - 80,492,461 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1780,434,900 - 80,492,530 (+)EnsemblGRCm39 Ensembl
GRCm381780,127,458 - 80,185,032 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1780,127,471 - 80,185,101 (+)EnsemblGRCm38mm10GRCm38
MGSCv371780,526,811 - 80,584,372 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361780,035,797 - 80,093,358 (+)NCBIMGSCv36mm8
Celera1784,443,907 - 84,501,487 (+)NCBICelera
Cytogenetic Map17E3NCBI
cM Map1750.46NCBI
Galm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8620,589,775 - 20,641,516 (-)NCBIGRCr8
mRatBN7.2614,837,540 - 14,889,484 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl614,837,548 - 14,889,310 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx615,135,882 - 15,187,744 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0615,458,146 - 15,509,901 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0614,954,424 - 15,006,178 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.062,808,988 - 2,860,742 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl62,808,841 - 2,860,744 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.062,785,889 - 2,837,635 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.463,024,123 - 3,078,720 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.163,024,122 - 3,078,719 (+)NCBI
Celera614,514,739 - 14,566,190 (-)NCBICelera
Cytogenetic Map6q12NCBI
Galm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554416,330,410 - 6,403,219 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554416,330,520 - 6,399,522 (+)NCBIChiLan1.0ChiLan1.0
GALM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21287,736,071 - 87,810,064 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A87,739,913 - 87,814,044 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A38,697,338 - 38,770,470 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A39,456,786 - 39,527,119 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A39,456,786 - 39,527,116 (+)Ensemblpanpan1.1panPan2
GALM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11730,741,990 - 30,793,456 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1730,742,127 - 30,792,465 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1730,558,189 - 30,609,682 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01731,397,079 - 31,448,378 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1731,397,221 - 31,447,503 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11730,619,873 - 30,671,292 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01730,689,932 - 30,741,032 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01730,902,711 - 30,953,995 (+)NCBIUU_Cfam_GSD_1.0
LOC101967759
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629241,066,829 - 41,333,563 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493650812,495,438 - 12,502,236 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3101,617,526 - 101,753,125 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13101,617,521 - 101,682,821 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23107,762,128 - 107,827,418 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GALM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11468,647,287 - 68,720,735 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1468,647,297 - 68,720,739 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604543,259,741 - 43,332,630 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000020399   ⟹   ENSHGLP00000020198
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473820,163,901 - 20,235,256 (+)Ensembl
RefSeq Acc Id: XM_004839318   ⟹   XP_004839375
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473820,164,179 - 20,234,995 (+)NCBI
RefSeq Acc Id: XM_004839319   ⟹   XP_004839376
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473820,164,180 - 20,236,151 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004839375 (Get FASTA)   NCBI Sequence Viewer  
  XP_004839376 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB18432 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020198
GenBank Protein JAN96661 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004839375   ⟸   XM_004839318
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004839376   ⟸   XM_004839319
- Peptide Label: isoform X2
- UniProtKB: G5CA71 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000020198   ⟸   ENSHGLT00000020399


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014460 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020399 ENTREZGENE
Gene3D-CATH 2.70.98.10 UniProtKB/TrEMBL
InterPro Ald1_epimerase_CS UniProtKB/TrEMBL
  Aldose_1-epimerase UniProtKB/TrEMBL
  Aldose_1/G6P_1-epimerase UniProtKB/TrEMBL
  Gal_mutarotase_sf_dom UniProtKB/TrEMBL
  Galactose_mutarotase-like UniProtKB/TrEMBL
  GH-type_carb-bd UniProtKB/TrEMBL
NCBI Gene Galm ENTREZGENE
PANTHER ALDOSE-1-EPIMERASE UniProtKB/TrEMBL
  GALACTOSE MUTAROTASE UniProtKB/TrEMBL
Pfam Aldose_epim UniProtKB/TrEMBL
PIRSF GALM UniProtKB/TrEMBL
PROSITE ALDOSE_1_EPIMERASE UniProtKB/TrEMBL
Superfamily-SCOP SSF74650 UniProtKB/TrEMBL
UniProt G5CA71 ENTREZGENE, UniProtKB/TrEMBL