LOC101706848 (cytochrome P450 4X1) - Rat Genome Database

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Gene: LOC101706848 (cytochrome P450 4X1) Heterocephalus glaber
Analyze
Symbol: LOC101706848 (Ensembl: CYP4X1)
Name: cytochrome P450 4X1
RGD ID: 18926833
Description: ENCODES a protein that exhibits anandamide 14,15 epoxidase activity (inferred); heme binding (inferred); iron ion binding (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CYP4X1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248595,669,726 - 5,686,910 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248595,647,610 - 5,697,885 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC101706848
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248595,669,726 - 5,686,910 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248595,647,610 - 5,697,885 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CYP4X1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38146,961,364 - 47,055,432 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl147,023,669 - 47,050,751 (+)EnsemblGRCh38hg38GRCh38
GRCh37147,427,036 - 47,516,423 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36147,261,827 - 47,289,010 (+)NCBINCBI36Build 36hg18NCBI36
Build 34147,201,259 - 47,228,442NCBI
Celera145,776,425 - 45,803,552 (+)NCBICelera
Cytogenetic Map1p33NCBI
HuRef145,605,361 - 45,632,362 (+)NCBIHuRef
CHM1_1147,606,010 - 47,633,192 (+)NCBICHM1_1
T2T-CHM13v2.0146,838,775 - 46,932,851 (+)NCBIT2T-CHM13v2.0
Cyp4x1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394114,963,518 - 114,991,276 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4114,963,520 - 114,991,478 (-)EnsemblGRCm39 Ensembl
GRCm384115,106,323 - 115,134,079 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4115,106,323 - 115,134,281 (-)EnsemblGRCm38mm10GRCm38
MGSCv374114,781,287 - 114,806,582 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364114,606,614 - 114,631,909 (-)NCBIMGSCv36mm8
Celera4113,855,830 - 113,880,996 (-)NCBICelera
Cytogenetic Map4D1NCBI
cM Map452.76NCBI
Cyp4x1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85133,888,439 - 133,923,254 (-)NCBIGRCr8
mRatBN7.25128,651,681 - 128,683,338 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5128,651,776 - 128,682,779 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5131,335,284 - 131,365,398 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05133,064,937 - 133,095,052 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05133,086,626 - 133,116,743 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05133,929,532 - 133,959,447 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5133,929,532 - 133,959,447 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05137,719,870 - 137,750,890 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45135,496,568 - 135,527,509 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15135,501,793 - 135,532,735 (-)NCBI
Celera5127,291,173 - 127,321,075 (-)NCBICelera
Cytogenetic Map5q35NCBI
LOC102010235
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546411,378,980 - 11,556,544 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546411,373,217 - 11,415,433 (-)NCBIChiLan1.0ChiLan1.0
CYP4X1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21179,761,822 - 179,789,015 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11178,903,543 - 178,930,702 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0146,322,430 - 46,349,646 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1147,676,533 - 47,703,724 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl147,676,533 - 47,703,724 (+)Ensemblpanpan1.1panPan2
CYP4X1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11513,509,032 - 13,546,803 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1513,509,508 - 13,605,382 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1513,662,665 - 13,699,145 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01513,658,546 - 13,696,331 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1513,659,035 - 13,696,333 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11513,459,321 - 13,495,830 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01513,527,340 - 13,563,865 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01513,596,850 - 13,633,361 (-)NCBIUU_Cfam_GSD_1.0
LOC101954492
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505862,145,582 - 62,175,706 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647427,970,523 - 28,000,518 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647427,970,585 - 27,997,909 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100627093
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16164,414,206 - 164,469,968 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26151,954,288 - 152,008,537 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYP4X1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12085,869,402 - 85,897,215 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2085,869,982 - 85,896,668 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603331,105,354 - 31,174,573 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000003277   ⟹   ENSHGLP00000003222
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248595,669,726 - 5,686,910 (-)Ensembl
RefSeq Acc Id: XM_004869315   ⟹   XP_004869372
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248595,662,225 - 5,697,885 (-)NCBI
RefSeq Acc Id: XM_004869316   ⟹   XP_004869373
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248595,662,225 - 5,697,885 (-)NCBI
RefSeq Acc Id: XM_004869317   ⟹   XP_004869374
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248595,647,610 - 5,697,885 (-)NCBI
RefSeq Acc Id: XM_013067259   ⟹   XP_012922713
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248595,662,225 - 5,697,885 (-)NCBI
RefSeq Acc Id: XM_013067261   ⟹   XP_012922715
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248595,662,225 - 5,694,496 (-)NCBI
RefSeq Acc Id: XM_021247951   ⟹   XP_021103610
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248595,662,025 - 5,697,885 (-)NCBI
RefSeq Acc Id: XM_021247952   ⟹   XP_021103611
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248595,662,225 - 5,697,200 (-)NCBI
RefSeq Acc Id: XM_021247953   ⟹   XP_021103612
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248595,662,225 - 5,697,604 (-)NCBI
RefSeq Acc Id: XP_004869374   ⟸   XM_004869317
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K451 (UniProtKB/TrEMBL),   G5BI97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103610   ⟸   XM_021247951
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K451 (UniProtKB/TrEMBL),   G5BI97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004869373   ⟸   XM_004869316
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K451 (UniProtKB/TrEMBL),   G5BI97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004869372   ⟸   XM_004869315
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K451 (UniProtKB/TrEMBL),   G5BI97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012922713   ⟸   XM_013067259
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K451 (UniProtKB/TrEMBL),   G5BI97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103612   ⟸   XM_021247953
- Peptide Label: isoform X2
- UniProtKB: G5BI97 (UniProtKB/TrEMBL),   A0AAX6S4H5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103611   ⟸   XM_021247952
- Peptide Label: isoform X2
- UniProtKB: G5BI97 (UniProtKB/TrEMBL),   A0AAX6S4H5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012922715   ⟸   XM_013067261
- Peptide Label: isoform X2
- UniProtKB: G5BI97 (UniProtKB/TrEMBL),   A0AAX6S4H5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000003222   ⟸   ENSHGLT00000003277


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002395 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100007426 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000003277 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100010123 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_CS UniProtKB/TrEMBL
  Cyt_P450_E_grp-I UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
  Cytochrome_P450_Monoox UniProtKB/TrEMBL
KEGG Report hgl:101706848 UniProtKB/TrEMBL
NCBI Gene LOC101706848 ENTREZGENE
PANTHER CYTOCHROME P450 4X1-RELATED UniProtKB/TrEMBL
  CYTOCHROME P450 FAMILY 4 UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
PRINTS EP450I UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
PROSITE CYTOCHROME_P450 UniProtKB/TrEMBL
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt A0A0P6K451 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S4H5 ENTREZGENE, UniProtKB/TrEMBL
  G5BI97 ENTREZGENE, UniProtKB/TrEMBL