Stag2 (STAG2 cohesin complex component) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Stag2 (STAG2 cohesin complex component) Heterocephalus glaber
Analyze
Symbol: Stag2
Name: STAG2 cohesin complex component (Ensembl:stromal antigen 2)
RGD ID: 18924907
Description: ENCODES a protein that exhibits chromatin binding (inferred); INVOLVED IN mitotic spindle assembly (ortholog); stem cell population maintenance (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN fibrillar center (ortholog); mitotic cohesin complex (ortholog); mitotic spindle pole (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Cohesin subunit SA-2; stromal antigen 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247972,719,508 - 2,794,379 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247972,659,785 - 2,794,168 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Stag2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247972,719,508 - 2,794,379 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247972,659,785 - 2,794,168 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
STAG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X123,960,560 - 124,102,656 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX123,960,212 - 124,422,664 (+)EnsemblGRCh38hg38GRCh38
GRCh37X123,094,410 - 123,236,506 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X122,922,156 - 123,064,187 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X122,821,123 - 122,961,881NCBI
CeleraX123,479,289 - 123,621,302 (+)NCBICelera
Cytogenetic MapXq25NCBI
HuRefX112,477,430 - 112,618,677 (+)NCBIHuRef
CHM1_1X123,005,854 - 123,147,859 (+)NCBICHM1_1
T2T-CHM13v2.0X122,270,973 - 122,413,073 (+)NCBIT2T-CHM13v2.0
Stag2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X41,238,172 - 41,366,063 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX41,238,194 - 41,366,062 (+)EnsemblGRCm39 Ensembl
GRCm38X42,149,297 - 42,277,186 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX42,149,317 - 42,277,185 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X39,502,589 - 39,630,352 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X38,437,644 - 38,520,801 (+)NCBIMGSCv36mm8
CeleraX29,725,317 - 29,852,205 (+)NCBICelera
Cytogenetic MapXA4NCBI
cM MapX23.19NCBI
Stag2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X125,839,660 - 125,971,209 (+)NCBIGRCr8
mRatBN7.2X120,974,687 - 121,105,677 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX120,974,857 - 121,105,677 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX123,087,011 - 123,217,866 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X126,608,406 - 126,739,229 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X124,202,345 - 124,332,973 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X128,493,603 - 128,624,418 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX128,493,614 - 128,624,418 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X128,583,874 - 128,712,851 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X2,840,102 - 2,970,905 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX120,088,891 - 120,219,108 (+)NCBICelera
Cytogenetic MapXq35NCBI
Stag2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547310,626,626 - 10,709,167 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547310,620,264 - 10,765,806 (-)NCBIChiLan1.0ChiLan1.0
STAG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X123,430,792 - 123,574,279 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X123,434,900 - 123,577,891 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X113,150,853 - 113,293,395 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X123,329,547 - 123,469,475 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX123,389,162 - 123,472,474 (+)Ensemblpanpan1.1panPan2
STAG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X95,397,174 - 95,532,716 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX95,396,870 - 95,531,133 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX81,463,787 - 81,600,314 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X97,180,536 - 97,317,088 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX97,181,684 - 97,317,091 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X94,612,633 - 94,748,876 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X96,368,835 - 96,505,478 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X96,158,221 - 96,294,739 (+)NCBIUU_Cfam_GSD_1.0
Stag2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X94,352,368 - 94,478,963 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364796,508,532 - 6,632,627 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364796,508,539 - 6,635,127 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX101,478,247 - 101,617,563 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X101,476,117 - 101,617,405 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X116,293,177 - 116,433,500 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STAG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606536,695,879 - 36,833,587 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000003865   ⟹   ENSHGLP00000003808
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247972,719,508 - 2,794,379 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000003866   ⟹   ENSHGLP00000003809
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247972,719,514 - 2,794,379 (+)Ensembl
RefSeq Acc Id: XM_004860021   ⟹   XP_004860078
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247972,659,785 - 2,793,370 (+)NCBI
RefSeq Acc Id: XM_013077887   ⟹   XP_012933341
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247972,660,991 - 2,793,370 (+)NCBI
RefSeq Acc Id: XM_021240535   ⟹   XP_021096194
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247972,719,614 - 2,794,168 (+)NCBI
RefSeq Acc Id: XM_021240536   ⟹   XP_021096195
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247972,660,992 - 2,793,370 (+)NCBI
RefSeq Acc Id: XM_021240537   ⟹   XP_021096196
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247972,659,785 - 2,793,370 (+)NCBI
RefSeq Acc Id: XM_021240539   ⟹   XP_021096198
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247972,661,376 - 2,793,370 (+)NCBI
RefSeq Acc Id: XM_021240540   ⟹   XP_021096199
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247972,661,369 - 2,793,370 (+)NCBI
RefSeq Acc Id: XM_021240541   ⟹   XP_021096200
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247972,660,994 - 2,794,168 (+)NCBI
RefSeq Acc Id: XP_021096196   ⟸   XM_021240537
- Peptide Label: isoform X1
- UniProtKB: G5BC48 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004860078   ⟸   XM_004860021
- Peptide Label: isoform X1
- UniProtKB: G5BC48 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012933341   ⟸   XM_013077887
- Peptide Label: isoform X1
- UniProtKB: G5BC48 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096195   ⟸   XM_021240536
- Peptide Label: isoform X1
- UniProtKB: G5BC48 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096200   ⟸   XM_021240541
- Peptide Label: isoform X2
- UniProtKB: G5BC48 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096199   ⟸   XM_021240540
- Peptide Label: isoform X1
- UniProtKB: G5BC48 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096198   ⟸   XM_021240539
- Peptide Label: isoform X1
- UniProtKB: G5BC48 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096194   ⟸   XM_021240535
- Peptide Label: isoform X1
- UniProtKB: G5BC48 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000003809   ⟸   ENSHGLT00000003866
Ensembl Acc Id: ENSHGLP00000003808   ⟸   ENSHGLT00000003865


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002804 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100005878 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000003865 ENTREZGENE
  ENSHGLT00000003866 ENTREZGENE
  ENSHGLT00000055089 UniProtKB/TrEMBL
  ENSHGLT00100081760 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  Cohesin_Scc3/SA UniProtKB/TrEMBL
  SCD UniProtKB/TrEMBL
  STAG UniProtKB/TrEMBL
NCBI Gene Stag2 ENTREZGENE
PANTHER COHESIN SUBUNIT SA-2 UniProtKB/TrEMBL
  STROMAL ANTIGEN UniProtKB/TrEMBL
Pfam SCD UniProtKB/TrEMBL
  STAG UniProtKB/TrEMBL
PROSITE SCD UniProtKB/TrEMBL
Superfamily-SCOP ARM repeat UniProtKB/TrEMBL
UniProt A0AAX6RHF7_HETGA UniProtKB/TrEMBL
  A0AAX6RJK1_HETGA UniProtKB/TrEMBL
  G5BC48 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-25 Stag2  STAG2 cohesin complex component  Stag2  stromal antigen 2  Symbol and/or name change 5135510 APPROVED