Kcnc2 (potassium voltage-gated channel subfamily C member 2) - Rat Genome Database

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Gene: Kcnc2 (potassium voltage-gated channel subfamily C member 2) Heterocephalus glaber
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Symbol: Kcnc2
Name: potassium voltage-gated channel subfamily C member 2
RGD ID: 18923360
Description: ENCODES a protein that exhibits delayed rectifier potassium channel activity (ortholog); transmembrane transporter binding (ortholog); voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (ortholog); INVOLVED IN action potential (ortholog); cellular response to ammonium ion (ortholog); cellular response to nitric oxide (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 103 (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN apical plasma membrane (ortholog); axolemma (ortholog); axon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: potassium voltage-gated channel, Shaw-related subfamily, member 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475022,807,370 - 22,996,753 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475022,807,234 - 22,996,614 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kcnc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475022,807,370 - 22,996,753 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475022,807,234 - 22,996,614 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KCNC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381275,040,078 - 75,209,839 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1275,040,077 - 75,209,839 (-)EnsemblGRCh38hg38GRCh38
GRCh371275,433,858 - 75,603,619 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361273,720,163 - 73,889,778 (-)NCBINCBI36Build 36hg18NCBI36
Build 341273,720,162 - 73,889,778NCBI
Celera1275,101,336 - 75,270,876 (-)NCBICelera
Cytogenetic Map12q21.1NCBI
HuRef1272,483,472 - 72,653,079 (-)NCBIHuRef
CHM1_11275,399,235 - 75,568,820 (-)NCBICHM1_1
T2T-CHM13v2.01275,014,738 - 75,184,480 (-)NCBIT2T-CHM13v2.0
Kcnc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910112,105,803 - 112,302,209 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10112,107,026 - 112,302,929 (+)EnsemblGRCm39 Ensembl
GRCm3810112,269,898 - 112,466,304 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10112,271,121 - 112,467,024 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710111,708,179 - 111,903,360 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610111,675,233 - 111,870,414 (+)NCBIMGSCv36mm8
Celera10114,210,354 - 114,400,944 (+)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1060.3NCBI
Kcnc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8749,586,274 - 49,770,212 (+)NCBIGRCr8
mRatBN7.2747,700,035 - 47,883,979 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl747,700,288 - 47,883,968 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx749,609,550 - 49,792,283 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0751,812,632 - 51,995,385 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0751,590,463 - 51,773,199 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0754,978,453 - 55,159,362 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl754,980,120 - 55,159,351 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0754,998,077 - 55,177,456 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4751,326,602 - 51,487,958 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1751,347,043 - 51,508,400 (+)NCBI
Celera744,495,328 - 44,675,986 (+)NCBICelera
Cytogenetic Map7q22NCBI
Kcnc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540514,422,396 - 14,600,341 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540514,420,447 - 14,599,780 (-)NCBIChiLan1.0ChiLan1.0
KCNC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21083,082,905 - 83,251,756 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11283,079,301 - 83,248,152 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01272,566,924 - 72,736,270 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11275,419,465 - 75,588,535 (-)NCBIpanpan1.1PanPan1.1panPan2
KCNC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11015,599,428 - 15,822,579 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1015,643,962 - 15,818,097 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1015,541,357 - 15,767,201 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01015,785,996 - 16,011,988 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1015,789,212 - 16,007,557 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11015,595,746 - 15,821,564 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01015,848,484 - 16,075,795 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01015,974,622 - 16,200,463 (-)NCBIUU_Cfam_GSD_1.0
Kcnc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494542,033,763 - 42,220,108 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365683,511,244 - 3,694,781 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365683,508,212 - 3,694,459 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl538,326,414 - 38,533,110 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1538,326,408 - 38,535,826 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2541,759,389 - 41,781,754 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCNC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11170,603,034 - 70,770,625 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1170,603,003 - 70,768,859 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037174,772,549 - 174,940,514 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004845018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004845019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004845020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004845021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004845022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004845024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021258521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021258522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021258523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021258524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01030991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01030992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01030993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01030994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01030995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01030996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000011580   ⟹   ENSHGLP00000011453
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475022,807,370 - 22,996,753 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000011581   ⟹   ENSHGLP00000011454
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475022,808,257 - 22,996,753 (+)Ensembl
RefSeq Acc Id: XM_004845018   ⟹   XP_004845075
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475022,807,729 - 22,996,614 (+)NCBI
RefSeq Acc Id: XM_004845019   ⟹   XP_004845076
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475022,808,198 - 22,996,614 (+)NCBI
RefSeq Acc Id: XM_004845020   ⟹   XP_004845077
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475022,808,545 - 22,996,614 (+)NCBI
RefSeq Acc Id: XM_004845021   ⟹   XP_004845078
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475022,807,729 - 22,996,614 (+)NCBI
RefSeq Acc Id: XM_004845022   ⟹   XP_004845079
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475022,807,729 - 22,996,614 (+)NCBI
RefSeq Acc Id: XM_004845024   ⟹   XP_004845081
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475022,807,729 - 22,996,614 (+)NCBI
RefSeq Acc Id: XM_021258521   ⟹   XP_021114180
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475022,807,234 - 22,996,614 (+)NCBI
RefSeq Acc Id: XM_021258522   ⟹   XP_021114181
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475022,807,729 - 22,996,614 (+)NCBI
RefSeq Acc Id: XM_021258523   ⟹   XP_021114182
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475022,807,729 - 22,996,614 (+)NCBI
RefSeq Acc Id: XM_021258524   ⟹   XP_021114183
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475022,807,729 - 22,994,449 (+)NCBI
RefSeq Acc Id: XP_021114180   ⟸   XM_021258521
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004845079   ⟸   XM_004845022
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004845075   ⟸   XM_004845018
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021114181   ⟸   XM_021258522
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021114182   ⟸   XM_021258523
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004845078   ⟸   XM_004845021
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004845081   ⟸   XM_004845024
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021114183   ⟸   XM_021258524
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004845076   ⟸   XM_004845019
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004845077   ⟸   XM_004845020
- Peptide Label: isoform X1
Ensembl Acc Id: ENSHGLP00000011453   ⟸   ENSHGLT00000011580
Ensembl Acc Id: ENSHGLP00000011454   ⟸   ENSHGLT00000011581


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008212 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000011580 ENTREZGENE
  ENSHGLT00000011581 ENTREZGENE
NCBI Gene Kcnc2 ENTREZGENE
UniProt A0AAX6P6K9_HETGA UniProtKB/TrEMBL
  A0AAX6P6W7_HETGA UniProtKB/TrEMBL
  A0AAX6P6W9_HETGA UniProtKB/TrEMBL
  A0AAX6P761_HETGA UniProtKB/TrEMBL
  A0AAX6SWM4_HETGA UniProtKB/TrEMBL