Bcl7b (BAF chromatin remodeling complex subunit BCL7B) - Rat Genome Database

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Gene: Bcl7b (BAF chromatin remodeling complex subunit BCL7B) Heterocephalus glaber
Analyze
Symbol: Bcl7b
Name: BAF chromatin remodeling complex subunit BCL7B
RGD ID: 18922936
Description: ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); genetic disease (ortholog); FOUND IN SWI/SNF complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: B-cell CLL/lymphoma 7 protein family member B; BCL tumor suppressor 7B; BCL7B, BAF complex component
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474014,223,384 - 14,240,671 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474014,223,391 - 14,237,897 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Bcl7b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474014,223,384 - 14,240,671 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474014,223,391 - 14,237,897 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BCL7B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38773,536,356 - 73,557,690 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl773,536,356 - 73,557,690 (-)EnsemblGRCh38hg38GRCh38
GRCh37772,950,686 - 72,972,020 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36772,588,622 - 72,609,960 (-)NCBINCBI36Build 36hg18NCBI36
Build 34772,395,336 - 72,416,675NCBI
Celera768,428,601 - 68,449,940 (-)NCBICelera
Cytogenetic Map7q11.23NCBI
HuRef768,832,300 - 68,853,680 (-)NCBIHuRef
CHM1_1773,096,104 - 73,117,479 (-)NCBICHM1_1
T2T-CHM13v2.0774,736,839 - 74,758,190 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2772,283,755 - 72,305,137 (-)NCBI
Bcl7b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395135,197,226 - 135,210,706 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5135,197,137 - 135,210,709 (+)EnsemblGRCm39 Ensembl
GRCm385135,168,372 - 135,181,852 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5135,168,283 - 135,181,855 (+)EnsemblGRCm38mm10GRCm38
MGSCv375135,644,242 - 135,657,722 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365135,453,119 - 135,466,472 (+)NCBIMGSCv36mm8
Celera5132,179,566 - 132,193,046 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.04NCBI
Bcl7b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81227,133,412 - 27,146,631 (-)NCBIGRCr8
mRatBN7.21221,496,860 - 21,510,079 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,496,856 - 21,510,202 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1222,638,494 - 22,651,869 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01223,250,819 - 23,264,194 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01222,317,282 - 22,330,657 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01224,543,748 - 24,557,093 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,543,759 - 24,556,976 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,541,051 - 26,554,396 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,651,275 - 22,656,141 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1223,259,412 - 23,272,757 (-)NCBICelera
Cytogenetic Map12q12NCBI
Bcl7b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545614,148,868 - 14,167,653 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545614,149,484 - 14,166,753 (+)NCBIChiLan1.0ChiLan1.0
BCL7B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2691,344,072 - 91,365,509 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17139,608,747 - 139,630,142 (+)NCBINHGRI_mPanPan1
PanPan1.1780,688,360 - 80,712,657 (-)NCBIpanpan1.1PanPan1.1panPan2
BCL7B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.166,680,619 - 6,701,601 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl66,680,735 - 6,700,639 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha68,377,928 - 8,398,893 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.066,495,597 - 6,516,598 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl66,471,231 - 6,516,598 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.166,485,070 - 6,506,023 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.066,432,831 - 6,453,818 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.066,596,500 - 6,617,465 (+)NCBIUU_Cfam_GSD_1.0
Bcl7b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344131,214,623 - 131,242,920 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365432,799,571 - 2,821,956 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365432,793,098 - 2,821,933 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCL7B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl310,850,354 - 10,869,288 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1310,850,347 - 10,887,485 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2310,550,010 - 10,587,144 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BCL7B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,498,053 - 9,527,419 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl289,498,161 - 9,526,542 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660706,952,624 - 6,978,801 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000022287   ⟹   ENSHGLP00000022076
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474014,223,384 - 14,240,671 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000022288   ⟹   ENSHGLP00000022077
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474014,223,503 - 14,237,038 (+)Ensembl
RefSeq Acc Id: XM_004840068   ⟹   XP_004840125
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474014,223,391 - 14,237,897 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004840125 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022076
GenBank Protein JAO02170 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004840125   ⟸   XM_004840068
- UniProtKB: A0A0P6JF24 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000022076   ⟸   ENSHGLT00000022287
RefSeq Acc Id: ENSHGLP00000022077   ⟸   ENSHGLT00000022288


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015751 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000022287 ENTREZGENE
InterPro BCL7 UniProtKB/TrEMBL
KEGG Report hgl:101707529 UniProtKB/TrEMBL
NCBI Gene Bcl7b ENTREZGENE
PANTHER B-CELL CLL/LYMPHOMA 7 PROTEIN FAMILY MEMBER B UniProtKB/TrEMBL
  PTHR12767 UniProtKB/TrEMBL
Pfam BCL_N UniProtKB/TrEMBL
UniProt A0A0P6JF24 ENTREZGENE, UniProtKB/TrEMBL