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Gene: Ppp4r1 (protein phosphatase 4 regulatory subunit 1) Heterocephalus glaber

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Symbol:

Ppp4r1

Name:

protein phosphatase 4 regulatory subunit 1

RGD ID:

18922531

Description:

ENCODES a protein that exhibits protein phosphatase regulator activity (inferred); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); dystonia (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

serine/threonine-protein phosphatase 4 regulatory subunit 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624770	18,150,135 - 18,206,898 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624770	18,150,135 - 18,206,835 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ppp4r1	Naked Mole-Rat	chromosome 18p deletion syndrome		ISO	PPP4R1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Del(18p) syndrome	ClinVar	PMID:31690835
Ppp4r1	Naked Mole-Rat	dystonia		ISO	PPP4R1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Dystonic disorder	ClinVar	PMID:25817843 and PMID:28492532
Ppp4r1	Naked Mole-Rat	intellectual disability		ISO	PPP4R1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ppp4r1	Naked Mole-Rat	cytoplasm	located_in	IEA	PANTHER:PTN001319762	150520179		TreeGrafter	GO_REF:0000118

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ppp4r1	Naked Mole-Rat	protein binding	enables	ISO	UniProtKB:P60510	9068941	PMID:16085932 more ...	IntAct	PMID:16085932 more ...
Ppp4r1	Naked Mole-Rat	protein phosphatase regulator activity	enables	IEA	PANTHER:PTN001319762	150520179		TreeGrafter	GO_REF:0000118

PMID:22301074	PMID:30032202

Ppp4r1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624770	18,150,135 - 18,206,898 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624770	18,150,135 - 18,206,835 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

PPP4R1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	9,546,794 - 9,617,199 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	9,546,791 - 9,615,240 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	18	9,546,792 - 9,614,557 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	9,536,792 - 9,604,600 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	18	9,536,841 - 9,604,567	NCBI
Celera	18	9,431,022 - 9,498,791 (-)	NCBI		Celera
Cytogenetic Map	18	p11.22	NCBI
HuRef	18	9,509,276 - 9,576,873 (-)	NCBI		HuRef
CHM1_1	18	9,546,520 - 9,614,326 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	18	9,710,190 - 9,781,391 (-)	NCBI		T2T-CHM13v2.0

Ppp4r1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	66,089,253 - 66,148,921 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	66,089,568 - 66,148,921 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	65,782,543 - 65,841,926 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	65,782,573 - 65,841,926 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	66,132,695 - 66,191,266 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	65,719,688 - 65,741,389 (+)	NCBI		MGSCv36	mm8
Celera	17	70,106,657 - 70,145,143 (+)	NCBI		Celera
Cytogenetic Map	17	E1.1	NCBI
cM Map	17	35.26	NCBI

Ppp4r1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	112,836,950 - 112,897,490 (+)	NCBI		GRCr8
mRatBN7.2	9	105,391,271 - 105,450,626 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	105,391,412 - 105,450,633 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	113,798,599 - 113,859,120 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	118,905,997 - 118,969,026 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	117,264,559 - 117,324,969 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	113,515,312 - 113,573,308 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	113,534,326 - 113,573,307 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	113,066,545 - 113,105,528 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	104,572,704 - 104,611,601 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	104,782,185 - 104,821,080 (+)	NCBI
Celera	9	102,770,161 - 102,827,110 (+)	NCBI		Celera
Cytogenetic Map	9	q37	NCBI

Ppp4r1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	2,515,057 - 2,568,860 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955402	2,529,335 - 2,568,621 (+)	NCBI	ChiLan1.0	ChiLan1.0

PPP4R1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	17	28,835,624 - 28,906,818 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	18	14,528,218 - 14,599,412 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	4,671,010 - 4,742,301 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	6,957,754 - 7,022,996 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	6,974,934 - 7,022,996 (+)	Ensembl	panpan1.1		panPan2

PPP4R1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	75,524,483 - 75,582,850 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	75,525,249 - 75,583,553 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	74,920,570 - 74,981,437 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	75,583,143 - 75,644,350 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	75,583,161 - 75,644,272 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	75,281,276 - 75,342,393 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	75,298,587 - 75,360,124 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	75,608,737 - 75,670,013 (-)	NCBI		UU_Cfam_GSD_1.0

Ppp4r1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	2,547,917 - 2,597,873 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936626	1,790,837 - 1,826,245 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936626	1,776,194 - 1,826,243 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PPP4R1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	98,462,855 - 98,544,477 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	98,462,833 - 98,539,649 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PPP4R1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	68,417,293 - 68,488,683 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	68,418,292 - 68,488,176 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	43,369,057 - 43,441,048 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_013075269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01050025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AHKG01050026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GEBF01005414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSHGLT00000007108 ⟹ ENSHGLP00000007024

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624770	18,150,135 - 18,206,898 (-)	Ensembl

RefSeq Acc Id:

XM_013075269 ⟹ XP_012930723

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624770	18,150,135 - 18,206,835 (-)	NCBI


Protein RefSeqs	XP_012930723	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSHGLP00000007024
GenBank Protein	JAN98218	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_012930723 ⟸ XM_013075269
- UniProtKB:	A0A0P6K276 (UniProtKB/TrEMBL), A0AAX6R333 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSHGLP00000007024 ⟸ ENSHGLT00000007108

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000005129	Ensembl, ENTREZGENE
Ensembl Transcript	ENSHGLT00000007108	ENTREZGENE
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	HEAT	UniProtKB/TrEMBL
	HEAT_type_2	UniProtKB/TrEMBL
	PP2A_Regulatory_Subunit_A	UniProtKB/TrEMBL
	WRNPLPNID	UniProtKB/TrEMBL
NCBI Gene	Ppp4r1	ENTREZGENE
PANTHER	PTHR10648:SF8	UniProtKB/TrEMBL
	SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT	UniProtKB/TrEMBL
Pfam	HEAT	UniProtKB/TrEMBL
	WRNPLPNID	UniProtKB/TrEMBL
PROSITE	HEAT_REPEAT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48371	UniProtKB/TrEMBL
UniProt	A0A0P6K276	ENTREZGENE, UniProtKB/TrEMBL
	A0AAX6R333	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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