Ppp4r1 (protein phosphatase 4 regulatory subunit 1) - Rat Genome Database

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Gene: Ppp4r1 (protein phosphatase 4 regulatory subunit 1) Heterocephalus glaber
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Symbol: Ppp4r1
Name: protein phosphatase 4 regulatory subunit 1
RGD ID: 18922531
Description: ENCODES a protein that exhibits protein phosphatase regulator activity (inferred); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); dystonia (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein phosphatase 4 regulatory subunit 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477018,150,135 - 18,206,898 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477018,150,135 - 18,206,835 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ppp4r1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477018,150,135 - 18,206,898 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477018,150,135 - 18,206,835 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PPP4R1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38189,546,794 - 9,617,199 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl189,546,791 - 9,615,240 (-)EnsemblGRCh38hg38GRCh38
GRCh37189,546,792 - 9,614,557 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36189,536,792 - 9,604,600 (-)NCBINCBI36Build 36hg18NCBI36
Build 34189,536,841 - 9,604,567NCBI
Celera189,431,022 - 9,498,791 (-)NCBICelera
Cytogenetic Map18p11.22NCBI
HuRef189,509,276 - 9,576,873 (-)NCBIHuRef
CHM1_1189,546,520 - 9,614,326 (-)NCBICHM1_1
T2T-CHM13v2.0189,710,190 - 9,781,391 (-)NCBIT2T-CHM13v2.0
Ppp4r1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391766,089,253 - 66,148,921 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1766,089,568 - 66,148,921 (+)EnsemblGRCm39 Ensembl
GRCm381765,782,543 - 65,841,926 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1765,782,573 - 65,841,926 (+)EnsemblGRCm38mm10GRCm38
MGSCv371766,132,695 - 66,191,266 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361765,719,688 - 65,741,389 (+)NCBIMGSCv36mm8
Celera1770,106,657 - 70,145,143 (+)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1735.26NCBI
Ppp4r1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89112,836,950 - 112,897,490 (+)NCBIGRCr8
mRatBN7.29105,391,271 - 105,450,626 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9105,391,412 - 105,450,633 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9113,798,599 - 113,859,120 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09118,905,997 - 118,969,026 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09117,264,559 - 117,324,969 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09113,515,312 - 113,573,308 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9113,534,326 - 113,573,307 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09113,066,545 - 113,105,528 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49104,572,704 - 104,611,601 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19104,782,185 - 104,821,080 (+)NCBI
Celera9102,770,161 - 102,827,110 (+)NCBICelera
Cytogenetic Map9q37NCBI
Ppp4r1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554022,515,057 - 2,568,860 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554022,529,335 - 2,568,621 (+)NCBIChiLan1.0ChiLan1.0
PPP4R1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21728,835,624 - 28,906,818 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11814,528,218 - 14,599,412 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0184,671,010 - 4,742,301 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1186,957,754 - 7,022,996 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl186,974,934 - 7,022,996 (+)Ensemblpanpan1.1panPan2
PPP4R1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1775,524,483 - 75,582,850 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl775,525,249 - 75,583,553 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha774,920,570 - 74,981,437 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0775,583,143 - 75,644,350 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl775,583,161 - 75,644,272 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1775,281,276 - 75,342,393 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0775,298,587 - 75,360,124 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0775,608,737 - 75,670,013 (-)NCBIUU_Cfam_GSD_1.0
Ppp4r1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049442,547,917 - 2,597,873 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366261,790,837 - 1,826,245 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366261,776,194 - 1,826,243 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP4R1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl698,462,855 - 98,544,477 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1698,462,833 - 98,539,649 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PPP4R1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11868,417,293 - 68,488,683 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1868,418,292 - 68,488,176 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605043,369,057 - 43,441,048 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000007108   ⟹   ENSHGLP00000007024
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477018,150,135 - 18,206,898 (-)Ensembl
RefSeq Acc Id: XM_013075269   ⟹   XP_012930723
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477018,150,135 - 18,206,835 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012930723 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007024
GenBank Protein JAN98218 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_012930723   ⟸   XM_013075269
- UniProtKB: A0A0P6K276 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000007024   ⟸   ENSHGLT00000007108


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005129 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000007108 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  HEAT UniProtKB/TrEMBL
  HEAT_type_2 UniProtKB/TrEMBL
  PP2A_Regulatory_Subunit_A UniProtKB/TrEMBL
  WRNPLPNID UniProtKB/TrEMBL
NCBI Gene Ppp4r1 ENTREZGENE
PANTHER PTHR10648:SF8 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT UniProtKB/TrEMBL
Pfam HEAT UniProtKB/TrEMBL
  WRNPLPNID UniProtKB/TrEMBL
PROSITE HEAT_REPEAT UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A0P6K276 ENTREZGENE, UniProtKB/TrEMBL