Ppp4r1 (protein phosphatase 4, regulatory subunit 1) - Rat Genome Database

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Gene: Ppp4r1 (protein phosphatase 4, regulatory subunit 1) Rattus norvegicus
Analyze
Symbol: Ppp4r1
Name: protein phosphatase 4, regulatory subunit 1
RGD ID: 619798
Description: Predicted to enable protein phosphatase regulator activity. Predicted to be involved in protein dephosphorylation. Predicted to be part of protein phosphatase 4 complex. Orthologous to human PPP4R1 (protein phosphatase 4 regulatory subunit 1); INTERACTS WITH 2,6-dinitrotoluene; 3-chloropropane-1,2-diol; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Pp4r1; serine/threonine-protein phosphatase 4 regulatory subunit 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29105,391,271 - 105,450,626 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9105,391,412 - 105,450,633 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9113,798,599 - 113,859,120 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.09118,905,997 - 118,969,026 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.09117,264,559 - 117,324,969 (+)NCBIRnor_WKY
Rnor_6.09113,515,312 - 113,573,308 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9113,534,326 - 113,573,307 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09113,066,545 - 113,105,528 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49104,572,704 - 104,611,601 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19104,782,185 - 104,821,080 (+)NCBI
Celera9102,770,161 - 102,827,110 (+)NCBICelera
Cytogenetic Map9q37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8. Cloning and characterization of a novel subunit of protein serine/threonine phosphatase 4 from mesangial cells. Wada T, etal., J Am Soc Nephrol 2001 Dec;12(12):2601-8.
Additional References at PubMed
PMID:15489334  


Genomics

Comparative Map Data
Ppp4r1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29105,391,271 - 105,450,626 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9105,391,412 - 105,450,633 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9113,798,599 - 113,859,120 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.09118,905,997 - 118,969,026 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.09117,264,559 - 117,324,969 (+)NCBIRnor_WKY
Rnor_6.09113,515,312 - 113,573,308 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9113,534,326 - 113,573,307 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09113,066,545 - 113,105,528 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49104,572,704 - 104,611,601 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19104,782,185 - 104,821,080 (+)NCBI
Celera9102,770,161 - 102,827,110 (+)NCBICelera
Cytogenetic Map9q37NCBI
PPP4R1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38189,546,794 - 9,617,199 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl189,546,791 - 9,615,240 (-)EnsemblGRCh38hg38GRCh38
GRCh37189,546,792 - 9,614,557 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36189,536,792 - 9,604,600 (-)NCBINCBI36Build 36hg18NCBI36
Build 34189,536,841 - 9,604,567NCBI
Celera189,431,022 - 9,498,791 (-)NCBICelera
Cytogenetic Map18p11.22NCBI
HuRef189,509,276 - 9,576,873 (-)NCBIHuRef
CHM1_1189,546,520 - 9,614,326 (-)NCBICHM1_1
T2T-CHM13v2.0189,710,190 - 9,777,940 (-)NCBIT2T-CHM13v2.0
Ppp4r1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391766,089,253 - 66,148,921 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1766,089,568 - 66,148,921 (+)EnsemblGRCm39 Ensembl
GRCm381765,782,543 - 65,841,926 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1765,782,573 - 65,841,926 (+)EnsemblGRCm38mm10GRCm38
MGSCv371766,132,695 - 66,191,266 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361765,719,688 - 65,741,389 (+)NCBIMGSCv36mm8
Celera1770,106,657 - 70,145,143 (+)NCBICelera
Cytogenetic Map17E1.1NCBI
Ppp4r1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554022,515,057 - 2,568,860 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554022,529,335 - 2,568,621 (+)NCBIChiLan1.0ChiLan1.0
PPP4R1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1186,957,754 - 7,022,996 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl186,974,934 - 7,022,996 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0184,671,010 - 4,742,301 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PPP4R1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1775,524,483 - 75,582,850 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl775,525,249 - 75,583,553 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha774,920,570 - 74,981,437 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0775,583,143 - 75,644,350 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl775,583,161 - 75,644,272 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1775,281,276 - 75,342,393 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0775,298,587 - 75,360,124 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0775,608,737 - 75,670,013 (-)NCBIUU_Cfam_GSD_1.0
Ppp4r1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049442,547,917 - 2,597,873 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366261,776,194 - 1,826,243 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP4R1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl698,462,855 - 98,544,477 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1698,462,833 - 98,539,649 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PPP4R1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11868,417,293 - 68,488,683 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1868,418,292 - 68,488,176 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605043,369,057 - 43,441,048 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp4r1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477018,150,135 - 18,206,898 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477018,150,135 - 18,206,835 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH132764  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29105,450,790 - 105,450,983 (+)MAPPERmRatBN7.2
Rnor_6.09113,573,473 - 113,573,665NCBIRnor6.0
Rnor_5.09113,105,693 - 113,105,885UniSTSRnor5.0
RGSC_v3.49104,611,766 - 104,611,958UniSTSRGSC3.4
Celera9102,827,275 - 102,827,467UniSTS
Cytogenetic Map9q37UniSTS
RH139106  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29105,450,826 - 105,450,983 (+)MAPPERmRatBN7.2
Rnor_6.09113,573,509 - 113,573,665NCBIRnor6.0
Rnor_5.09113,105,729 - 113,105,885UniSTSRnor5.0
RGSC_v3.49104,611,802 - 104,611,958UniSTSRGSC3.4
Celera9102,827,311 - 102,827,467UniSTS
Cytogenetic Map9q37UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:511
Count of miRNA genes:260
Interacting mature miRNAs:316
Transcripts:ENSRNOT00000066793
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 55 39 19 39 3 3 74 35 41 11 3
Low 2 2 2 2 5 8 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_080907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF332004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000066793   ⟹   ENSRNOP00000061977
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9105,391,938 - 105,450,625 (+)Ensembl
Rnor_6.0 Ensembl9113,534,326 - 113,573,307 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104139   ⟹   ENSRNOP00000090902
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9105,391,412 - 105,450,633 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111258   ⟹   ENSRNOP00000097964
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9105,408,035 - 105,450,633 (+)Ensembl
RefSeq Acc Id: NM_080907   ⟹   NP_543183
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29105,391,938 - 105,450,626 (+)NCBI
Rnor_6.09113,515,312 - 113,573,308 (+)NCBI
Rnor_5.09113,066,545 - 113,105,528 (+)NCBI
RGSC_v3.49104,572,704 - 104,611,601 (+)RGD
Celera9102,770,161 - 102,827,110 (+)RGD
Sequence:
RefSeq Acc Id: XM_039082977   ⟹   XP_038938905
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29105,408,011 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082978   ⟹   XP_038938906
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29105,391,956 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082979   ⟹   XP_038938907
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29105,392,266 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082980   ⟹   XP_038938908
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29105,391,884 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082981   ⟹   XP_038938909
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29105,408,010 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082982   ⟹   XP_038938910
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29105,391,271 - 105,450,626 (+)NCBI
RefSeq Acc Id: XM_039082983   ⟹   XP_038938911
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29105,408,014 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082984   ⟹   XP_038938912
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29105,391,522 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082985   ⟹   XP_038938913
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29105,408,012 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082986   ⟹   XP_038938914
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29105,392,001 - 105,449,805 (+)NCBI
RefSeq Acc Id: XM_039082987   ⟹   XP_038938915
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29105,408,010 - 105,449,805 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_543183   ⟸   NM_080907
- UniProtKB: Q8VI02 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000061977   ⟸   ENSRNOT00000066793
RefSeq Acc Id: XP_038938910   ⟸   XM_039082982
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038938912   ⟸   XM_039082984
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038938908   ⟸   XM_039082980
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038938906   ⟸   XM_039082978
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038938914   ⟸   XM_039082986
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038938907   ⟸   XM_039082979
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038938909   ⟸   XM_039082981
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038938915   ⟸   XM_039082987
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038938905   ⟸   XM_039082977
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938913   ⟸   XM_039082985
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038938911   ⟸   XM_039082983
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000097964   ⟸   ENSRNOT00000111258
RefSeq Acc Id: ENSRNOP00000090902   ⟸   ENSRNOT00000104139
Protein Domains
WRNPLPNID

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VI02-F1-model_v2 AlphaFold Q8VI02 1-951 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619798 AgrOrtholog
BioCyc Gene G2FUF-26483 BioCyc
Ensembl Genes ENSRNOG00000013733 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000061977 ENTREZGENE
  ENSRNOP00000061977.3 UniProtKB/TrEMBL
  ENSRNOP00000090902 ENTREZGENE
  ENSRNOP00000090902.1 UniProtKB/TrEMBL
  ENSRNOP00000097964 ENTREZGENE
  ENSRNOP00000097964.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066793 ENTREZGENE
  ENSRNOT00000066793.4 UniProtKB/TrEMBL
  ENSRNOT00000104139 ENTREZGENE
  ENSRNOT00000104139.1 UniProtKB/TrEMBL
  ENSRNOT00000111258 ENTREZGENE
  ENSRNOT00000111258.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5598703 IMAGE-MGC_LOAD
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HEAT_type_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PP4R1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WRNPLPNID UniProtKB/TrEMBL
KEGG Report rno:140943 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72329 IMAGE-MGC_LOAD
NCBI Gene 140943 ENTREZGENE
PANTHER PTHR10648:SF8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WRNPLPNID UniProtKB/TrEMBL
PhenoGen Ppp4r1 PhenoGen
PROSITE HEAT_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6ACS7_RAT UniProtKB/TrEMBL
  A0A8I6AX20_RAT UniProtKB/TrEMBL
  F1LRK9_RAT UniProtKB/TrEMBL
  PP4R1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Ppp4r1  protein phosphatase 4, regulatory subunit 1      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Ppp4r1  protein phosphatase 4, regulatory subunit 1      Symbol and Name status set to provisional 70820 PROVISIONAL