Cdc16 (cell division cycle 16) - Rat Genome Database

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Gene: Cdc16 (cell division cycle 16) Heterocephalus glaber
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Symbol: Cdc16
Name: cell division cycle 16
RGD ID: 18921676
Description: INVOLVED IN anaphase-promoting complex-dependent catabolic process (ortholog); protein branched polyubiquitination (ortholog); protein K11-linked ubiquitination (ortholog); ASSOCIATED WITH factor X deficiency (ortholog); FOUND IN anaphase-promoting complex (ortholog); centrosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell division cycle protein 16 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624793151,508 - 186,342 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cdc16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624793151,508 - 186,342 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CDC16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813114,234,897 - 114,272,723 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13114,234,887 - 114,272,723 (+)EnsemblGRCh38hg38GRCh38
GRCh3713115,000,372 - 115,038,198 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613114,018,464 - 114,056,252 (+)NCBINCBI36Build 36hg18NCBI36
Build 3413114,018,475 - 114,056,252NCBI
Celera1395,672,733 - 95,710,522 (+)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1395,262,577 - 95,300,344 (+)NCBIHuRef
CHM1_113114,969,034 - 115,006,823 (+)NCBICHM1_1
T2T-CHM13v2.013113,443,956 - 113,481,783 (+)NCBIT2T-CHM13v2.0
Cdc16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39813,807,650 - 13,831,951 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl813,807,676 - 13,831,938 (+)EnsemblGRCm39 Ensembl
GRCm38813,757,649 - 13,781,951 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl813,757,676 - 13,781,938 (+)EnsemblGRCm38mm10GRCm38
MGSCv37813,757,690 - 13,781,882 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36813,757,667 - 13,781,859 (+)NCBIMGSCv36mm8
Celera813,923,731 - 13,947,923 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map86.38NCBI
Cdc16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81682,475,234 - 82,498,797 (-)NCBIGRCr8
mRatBN7.21675,773,026 - 75,796,586 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1675,773,028 - 75,796,550 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1681,053,720 - 81,077,204 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01684,506,682 - 84,530,166 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01679,756,976 - 79,780,137 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01681,493,355 - 81,516,493 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1681,493,355 - 81,516,493 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01680,981,546 - 81,004,585 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41680,628,131 - 80,650,925 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11680,628,395 - 80,651,190 (-)NCBI
Celera1673,581,950 - 73,604,842 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
Cdc16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540445,383 - 71,466 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540447,126 - 71,602 (-)NCBIChiLan1.0ChiLan1.0
CDC16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214115,728,810 - 115,769,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113114,409,954 - 114,449,375 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01395,300,763 - 95,340,762 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113114,369,774 - 114,407,267 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13114,369,774 - 114,407,267 (+)Ensemblpanpan1.1panPan2
CDC16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12261,283,263 - 61,312,283 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2261,283,309 - 61,312,283 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2260,994,906 - 61,023,919 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02261,970,375 - 61,999,261 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2261,970,404 - 62,000,439 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12261,407,802 - 61,436,819 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02261,416,165 - 61,444,982 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02261,443,393 - 61,472,197 (+)NCBIUU_Cfam_GSD_1.0
Cdc16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945196,169,252 - 196,194,381 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937030216,744 - 241,196 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004937030217,078 - 242,126 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1179,084,182 - 79,115,268 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11179,084,243 - 79,111,758 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap11qNCBI
CDC16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1392,018,619 - 92,057,232 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl392,018,681 - 92,059,413 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604649,312,946 - 49,352,029 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004858477   ⟹   XP_004858534
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624793159,924 - 186,342 (-)NCBI
RefSeq Acc Id: XR_001184330
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624793151,508 - 186,342 (-)NCBI
RefSeq Acc Id: XR_001184331
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624793154,122 - 186,342 (-)NCBI
RefSeq Acc Id: XR_002387381
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624793159,924 - 186,342 (-)NCBI
RefSeq Acc Id: XR_002387382
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624793151,508 - 186,313 (-)NCBI
RefSeq Acc Id: XR_002387383
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624793151,508 - 186,199 (-)NCBI
RefSeq Acc Id: XR_002387384
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624793151,508 - 186,325 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004858534 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002423
RefSeq Acc Id: XP_004858534   ⟸   XM_004858477


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001834 ENTREZGENE
Ensembl Transcript ENSHGLT00000002474 ENTREZGENE
NCBI Gene Cdc16 ENTREZGENE