Cdc16 (cell division cycle 16) - Rat Genome Database

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Gene: Cdc16 (cell division cycle 16) Ictidomys tridecemlineatus
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Symbol: Cdc16
Name: cell division cycle 16
RGD ID: 12460297
Description: INVOLVED IN anaphase-promoting complex-dependent catabolic process (inferred); cell division (inferred); positive regulation of mitotic metaphase/anaphase transition (inferred); ASSOCIATED WITH factor X deficiency (ortholog); genetic disease (ortholog); FOUND IN anaphase-promoting complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell division cycle 16, transcript variant X1; cell division cycle 16, transcript variant X2; cell division cycle protein 16 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945196,169,252 - 196,194,381 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937030216,744 - 241,196 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004937030217,078 - 242,126 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cdc16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945196,169,252 - 196,194,381 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937030216,744 - 241,196 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004937030217,078 - 242,126 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813114,234,897 - 114,272,723 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13114,234,887 - 114,272,723 (+)EnsemblGRCh38hg38GRCh38
GRCh3713115,000,372 - 115,038,198 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613114,018,464 - 114,056,252 (+)NCBINCBI36Build 36hg18NCBI36
Build 3413114,018,475 - 114,056,252NCBI
Celera1395,672,733 - 95,710,522 (+)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1395,262,577 - 95,300,344 (+)NCBIHuRef
CHM1_113114,969,034 - 115,006,823 (+)NCBICHM1_1
T2T-CHM13v2.013113,443,956 - 113,481,783 (+)NCBIT2T-CHM13v2.0
Cdc16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39813,807,650 - 13,831,951 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl813,807,676 - 13,831,938 (+)EnsemblGRCm39 Ensembl
GRCm38813,757,649 - 13,781,951 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl813,757,676 - 13,781,938 (+)EnsemblGRCm38mm10GRCm38
MGSCv37813,757,690 - 13,781,882 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36813,757,667 - 13,781,859 (+)NCBIMGSCv36mm8
Celera813,923,731 - 13,947,923 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map86.38NCBI
Cdc16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81682,475,234 - 82,498,797 (-)NCBIGRCr8
mRatBN7.21675,773,026 - 75,796,586 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1675,773,028 - 75,796,550 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1681,053,720 - 81,077,204 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01684,506,682 - 84,530,166 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01679,756,976 - 79,780,137 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01681,493,355 - 81,516,493 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1681,493,355 - 81,516,493 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01680,981,546 - 81,004,585 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41680,628,131 - 80,650,925 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11680,628,395 - 80,651,190 (-)NCBI
Celera1673,581,950 - 73,604,842 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
Cdc16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540445,383 - 71,466 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540447,126 - 71,602 (-)NCBIChiLan1.0ChiLan1.0
CDC16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214115,728,810 - 115,769,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113114,409,954 - 114,449,375 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01395,300,763 - 95,340,762 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113114,369,774 - 114,407,267 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13114,369,774 - 114,407,267 (+)Ensemblpanpan1.1panPan2
CDC16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12261,283,263 - 61,312,283 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2261,283,309 - 61,312,283 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2260,994,906 - 61,023,919 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02261,970,375 - 61,999,261 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2261,970,404 - 62,000,439 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12261,407,802 - 61,436,819 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02261,416,165 - 61,444,982 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02261,443,393 - 61,472,197 (+)NCBIUU_Cfam_GSD_1.0
CDC16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1179,084,182 - 79,115,268 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11179,084,243 - 79,111,758 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap11qNCBI
CDC16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1392,018,619 - 92,057,232 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl392,018,681 - 92,059,413 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604649,312,946 - 49,352,029 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624793151,508 - 186,342 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000013803   ⟹   ENSSTOP00000012372
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004937030217,102 - 241,196 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000033370   ⟹   ENSSTOP00000030695
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004937030216,963 - 240,978 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000042039   ⟹   ENSSTOP00000027753
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004937030216,744 - 240,978 (+)Ensembl
RefSeq Acc Id: XM_021721410   ⟹   XP_021577085
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945196,169,252 - 196,194,381 (+)NCBI
SpeTri2.0NW_004937030217,078 - 242,126 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040281773   ⟹   XP_040137707
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945196,169,497 - 196,194,381 (+)NCBI
RefSeq Acc Id: XM_040281774   ⟹   XP_040137708
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945196,169,252 - 196,193,217 (+)NCBI
RefSeq Acc Id: XR_005732263
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945196,169,252 - 196,192,995 (+)NCBI
RefSeq Acc Id: XP_021577085   ⟸   XM_021721410
- Peptide Label: isoform X1
- UniProtKB: I3MLQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040137708   ⟸   XM_040281774
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040137707   ⟸   XM_040281773
- Peptide Label: isoform X1
- UniProtKB: I3MLQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000030695   ⟸   ENSSTOT00000033370
RefSeq Acc Id: ENSSTOP00000027753   ⟸   ENSSTOT00000042039
RefSeq Acc Id: ENSSTOP00000012372   ⟸   ENSSTOT00000013803


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013794 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013803.3 UniProtKB/TrEMBL
  ENSSTOT00000033370.1 UniProtKB/TrEMBL
  ENSSTOT00000042039.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene Cdc16 ENTREZGENE
PANTHER CELL DIVISION CYCLE 16,23,27 UniProtKB/TrEMBL
  CELL DIVISION CYCLE PROTEIN 16 HOMOLOG UniProtKB/TrEMBL
Pfam ANAPC3 UniProtKB/TrEMBL
  TPR_12 UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A287D2H7_ICTTR UniProtKB/TrEMBL
  A0A287DAW1_ICTTR UniProtKB/TrEMBL
  I3MLQ6 ENTREZGENE, UniProtKB/TrEMBL