LOC101702679 (cytochrome c oxidase copper chaperone) - Rat Genome Database

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Gene: LOC101702679 (cytochrome c oxidase copper chaperone) Heterocephalus glaber
Analyze
Symbol: LOC101702679 (Ensembl: COX17)
Name: cytochrome c oxidase copper chaperone
RGD ID: 18921335
Description: ENCODES a protein that exhibits cuprous ion binding (ortholog); enzyme activator activity (ortholog); INVOLVED IN heart development (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH Chronic Hepatitis (ortholog); Lung Neoplasms (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: COX17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473128,481,594 - 28,488,528 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473128,481,591 - 28,488,395 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101702679
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473128,481,594 - 28,488,528 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473128,481,591 - 28,488,395 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
COX17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383119,663,975 - 119,677,406 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3119,654,513 - 119,677,454 (-)EnsemblGRCh38hg38GRCh38
GRCh373119,382,822 - 119,396,253 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363120,871,062 - 120,878,933 (-)NCBINCBI36Build 36hg18NCBI36
Build 343120,871,061 - 120,878,933NCBI
Celera3117,796,888 - 117,804,750 (-)NCBICelera
Cytogenetic Map3q13.33NCBI
HuRef3116,764,172 - 116,772,021 (-)NCBIHuRef
CHM1_13119,351,879 - 119,359,738 (-)NCBICHM1_1
T2T-CHM13v2.03122,383,687 - 122,397,091 (-)NCBIT2T-CHM13v2.0
Cox17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391638,167,332 - 38,173,125 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1638,167,353 - 38,182,659 (+)EnsemblGRCm39 Ensembl
GRCm381638,346,983 - 38,352,763 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1638,346,991 - 38,352,763 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1638,347,040 - 38,362,297 (+)EnsemblGRCm38mm10GRCm38
MGSCv371638,347,085 - 38,352,849 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361638,266,238 - 38,272,002 (+)NCBIMGSCv36mm8
Celera1638,757,318 - 38,763,078 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1626.77NCBI
Cox17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,906,245 - 75,912,036 (-)NCBIGRCr8
mRatBN7.21162,400,733 - 62,406,507 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1171,213,255 - 71,219,029 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01163,875,474 - 63,881,248 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01162,925,841 - 62,931,615 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01164,962,663 - 64,968,437 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,962,666 - 64,968,437 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,113,608 - 67,119,382 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41164,183,573 - 64,185,985 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11164,241,161 - 64,243,574 (-)NCBI
Celera1161,901,400 - 61,907,174 (-)NCBICelera
Cytogenetic Map11q21NCBI
LOC102021151
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542719,376,482 - 19,384,270 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542719,376,482 - 19,384,270 (-)NCBIChiLan1.0ChiLan1.0
LOC100970363
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22117,635,812 - 117,651,655 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13117,640,582 - 117,656,437 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03116,786,430 - 116,796,888 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13123,696,145 - 123,709,178 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3123,701,288 - 123,709,205 (-)Ensemblpanpan1.1panPan2
COX17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13323,305,119 - 23,313,022 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3323,305,085 - 23,313,064 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3323,335,000 - 23,342,902 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03323,542,750 - 23,550,698 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3323,542,719 - 23,550,757 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13323,345,044 - 23,352,977 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03323,380,906 - 23,388,783 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03323,950,638 - 23,958,576 (-)NCBIUU_Cfam_GSD_1.0
LOC101975509
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602130,925,823 - 130,947,006 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365366,560,329 - 6,596,259 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365366,575,010 - 6,596,172 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COX17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13140,584,363 - 140,587,621 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113140,584,286 - 140,594,636 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213149,914,913 - 149,944,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COX17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12261,143,400 - 61,151,348 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2261,143,462 - 61,151,299 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041105,160,833 - 105,168,998 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000018825   ⟹   ENSHGLP00000018640
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473128,481,594 - 28,488,528 (+)Ensembl
RefSeq Acc Id: XM_004835660   ⟹   XP_004835717
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473128,481,591 - 28,488,395 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004835717 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB00610 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018640
  ENSHGLP00100003876
GenBank Protein JAN96452 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004835717   ⟸   XM_004835660
- UniProtKB: G5AU99 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000018640   ⟸   ENSHGLT00000018825


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013341 Ensembl, ENTREZGENE
  ENSHGLG00100002957 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000018825 ENTREZGENE
  ENSHGLT00100003937 UniProtKB/TrEMBL
Gene3D-CATH CytochromE C oxidase copper chaperone UniProtKB/TrEMBL
InterPro Cys_alpha_HP_mot_SF UniProtKB/TrEMBL
  Cyt_c_oxidase_Cu-chaperone UniProtKB/TrEMBL
KEGG Report hgl:101702679 UniProtKB/TrEMBL
NCBI Gene LOC101702679 ENTREZGENE
PANTHER CYTOCHROME C OXIDASE COPPER CHAPERONE UniProtKB/TrEMBL
  PTHR16719 UniProtKB/TrEMBL
Pfam COX17 UniProtKB/TrEMBL
PROSITE CHCH UniProtKB/TrEMBL
Superfamily-SCOP SSF47072 UniProtKB/TrEMBL
UniProt G5AU99 ENTREZGENE, UniProtKB/TrEMBL