Trappc14 (trafficking protein particle complex subunit 14) - Rat Genome Database

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Gene: Trappc14 (trafficking protein particle complex subunit 14) Heterocephalus glaber
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Symbol: Trappc14
Name: trafficking protein particle complex subunit 14 (Ensembl:microtubule associated protein 11)
RGD ID: 18920641
Description: ENCODES a protein that exhibits alpha-tubulin binding (inferred); INVOLVED IN regulation of cell population proliferation (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); Primary Autosomal Recessive Microcephaly 25 (ortholog); FOUND IN centriolar satellite (ortholog); intracellular membrane-bounded organelle (ortholog); midbody (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C7orf43 homolog; CUNH7orf43; Map11; microtubule associated protein 11; trafficking protein particle complex 14; uncharacterized protein C7orf43 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474016,748,281 - 16,756,542 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474016,748,276 - 16,752,580 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Trappc14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474016,748,281 - 16,756,542 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474016,748,276 - 16,752,580 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TRAPPC14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,154,423 - 100,158,723 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,154,420 - 100,158,723 (-)EnsemblGRCh38hg38GRCh38
GRCh37799,752,046 - 99,756,346 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,589,979 - 99,594,238 (-)NCBINCBI36Build 36hg18NCBI36
Celera794,487,394 - 94,491,646 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,387,014 - 94,391,191 (-)NCBIHuRef
CHM1_1799,682,170 - 99,686,429 (-)NCBICHM1_1
T2T-CHM13v2.07101,394,216 - 101,398,516 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,112,129 - 99,116,387 (-)NCBI
Trappc14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,257,920 - 138,262,323 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,257,918 - 138,262,295 (-)EnsemblGRCm39 Ensembl
GRCm385138,259,658 - 138,264,061 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,259,656 - 138,264,033 (-)EnsemblGRCm38mm10GRCm38
MGSCv375138,700,886 - 138,705,280 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365138,489,446 - 138,492,973 (-)NCBIMGSCv36mm8
Celera5135,242,510 - 135,246,904 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map577.0NCBI
Trappc14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,376,361 - 22,380,706 (-)NCBIGRCr8
mRatBN7.21217,262,748 - 17,267,093 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1217,262,750 - 17,267,084 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1218,230,277 - 18,234,567 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,854,000 - 18,858,290 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,907,412 - 17,911,702 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,577,895 - 19,582,185 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,573,893 - 19,582,208 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01221,634,744 - 21,639,034 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41217,843,341 - 17,847,631 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11217,833,446 - 17,838,394 (-)NCBI
Celera1219,187,407 - 19,191,698 (-)NCBICelera
Cytogenetic Map12q11NCBI
Trappc14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955573645,587 - 649,363 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955573644,907 - 649,363 (+)NCBIChiLan1.0ChiLan1.0
TRAPPC14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26118,073,355 - 118,077,663 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17166,337,987 - 166,342,295 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0792,189,179 - 92,193,483 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17105,621,902 - 105,626,216 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7105,622,497 - 105,625,978 (-)Ensemblpanpan1.1panPan2
TRAPPC14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,368,006 - 9,372,493 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl69,368,029 - 9,373,043 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,071,992 - 11,076,486 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.069,301,680 - 9,306,164 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl69,301,703 - 9,389,155 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.169,154,164 - 9,158,662 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,133,226 - 9,137,704 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.069,314,289 - 9,318,777 (+)NCBIUU_Cfam_GSD_1.0
Trappc14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,620,088 - 133,624,561 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936543412,524 - 416,445 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936543411,972 - 416,442 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAPPC14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,158,070 - 8,162,425 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,158,062 - 8,162,738 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.237,359,744 - 7,364,018 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRAPPC14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,911,287 - 12,915,935 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2812,911,531 - 12,915,321 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660703,364,326 - 3,368,969 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000021338   ⟹   ENSHGLP00000021135
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474016,748,281 - 16,756,542 (+)Ensembl
RefSeq Acc Id: XM_004840216   ⟹   XP_004840273
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474016,748,276 - 16,752,580 (+)NCBI
RefSeq Acc Id: XM_021254520   ⟹   XP_021110179
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474016,748,276 - 16,751,750 (+)NCBI
RefSeq Acc Id: XM_021254521   ⟹   XP_021110180
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474016,748,276 - 16,751,747 (+)NCBI
RefSeq Acc Id: XM_021254522   ⟹   XP_021110181
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474016,748,911 - 16,752,180 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004840273 (Get FASTA)   NCBI Sequence Viewer  
  XP_021110179 (Get FASTA)   NCBI Sequence Viewer  
  XP_021110180 (Get FASTA)   NCBI Sequence Viewer  
  XP_021110181 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000021135
RefSeq Acc Id: XP_004840273   ⟸   XM_004840216
- Peptide Label: isoform X1
- UniProtKB: G5AN23 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110179   ⟸   XM_021254520
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021110180   ⟸   XM_021254521
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021110181   ⟸   XM_021254522
- Peptide Label: isoform X3
Ensembl Acc Id: ENSHGLP00000021135   ⟸   ENSHGLT00000021338


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015099 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021338 ENTREZGENE
InterPro TRAPPC14 UniProtKB/TrEMBL
NCBI Gene Map11 ENTREZGENE
PANTHER MICROTUBULE-ASSOCIATED PROTEIN 11 UniProtKB/TrEMBL
  TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 14 UniProtKB/TrEMBL
Pfam DUF4707 UniProtKB/TrEMBL
UniProt G5AN23 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-16 Trappc14  trafficking protein particle complex subunit 14  Trappc14  trafficking protein particle complex 14  Symbol and/or name change 5135510 APPROVED
2020-09-29 Trappc14  trafficking protein particle complex 14  Map11  microtubule associated protein 11  Symbol and/or name change 5135510 APPROVED