Atcay (ATCAY kinesin light chain interacting caytaxin) - Rat Genome Database

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Gene: Atcay (ATCAY kinesin light chain interacting caytaxin) Heterocephalus glaber
Analyze
Symbol: Atcay
Name: ATCAY kinesin light chain interacting caytaxin
RGD ID: 18920337
Description: ENCODES a protein that exhibits kinesin binding (ortholog); INVOLVED IN mitochondrion distribution (ortholog); negative regulation of glutamate metabolic process (ortholog); neuron projection development (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Ataxia (ortholog); Cayman type cerebellar ataxia (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); mitochondrial membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATCAY, caytaxin; caytaxin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248286,471,460 - 6,495,142 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248286,471,452 - 6,495,142 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Atcay
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248286,471,460 - 6,495,142 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248286,471,452 - 6,495,142 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATCAY
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,880,685 - 3,928,082 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl193,879,864 - 3,928,082 (+)EnsemblGRCh38hg38GRCh38
GRCh37193,880,683 - 3,928,080 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,831,639 - 3,879,080 (+)NCBINCBI36Build 36hg18NCBI36
Build 34193,831,675 - 3,877,004NCBI
Celera193,818,196 - 3,865,544 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef193,644,535 - 3,691,726 (+)NCBIHuRef
CHM1_1193,880,227 - 3,927,684 (+)NCBICHM1_1
T2T-CHM13v2.0193,859,875 - 3,907,372 (+)NCBIT2T-CHM13v2.0
Atcay
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,040,338 - 81,067,037 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1081,040,342 - 81,066,667 (-)EnsemblGRCm39 Ensembl
GRCm381081,204,504 - 81,230,845 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,204,508 - 81,230,833 (-)EnsemblGRCm38mm10GRCm38
MGSCv371080,667,258 - 80,693,524 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361080,607,642 - 80,633,908 (-)NCBIMGSCv36mm8
Celera1082,224,870 - 82,251,132 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Atcay
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr879,138,485 - 9,162,249 (+)NCBIGRCr8
mRatBN7.278,487,763 - 8,511,527 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,487,763 - 8,512,663 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx711,371,965 - 11,396,564 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0713,247,448 - 13,272,043 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0711,114,964 - 11,138,493 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0711,356,017 - 11,379,782 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,356,118 - 11,380,913 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0711,523,425 - 11,547,188 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.479,971,563 - 9,995,528 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.179,971,756 - 10,001,916 (+)NCBI
Celera76,676,006 - 6,699,559 (+)NCBICelera
Cytogenetic Map7q11NCBI
Atcay
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554955,715,850 - 5,741,202 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554955,715,943 - 5,741,202 (+)NCBIChiLan1.0ChiLan1.0
ATCAY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2208,277,727 - 8,325,463 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,509,355 - 7,557,069 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0192,905,615 - 2,953,079 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1193,854,423 - 3,900,175 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,854,423 - 3,900,175 (+)Ensemblpanpan1.1panPan2
ATCAY
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12055,610,124 - 55,641,879 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2055,612,260 - 55,641,832 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2055,335,634 - 55,367,384 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02056,270,246 - 56,302,013 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2056,270,249 - 56,302,650 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12055,326,177 - 55,357,852 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02055,807,965 - 55,839,664 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02056,006,705 - 56,038,464 (-)NCBIUU_Cfam_GSD_1.0
Atcay
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118215,608,298 - 215,638,037 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365882,196,580 - 2,229,202 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365882,196,556 - 2,226,489 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATCAY
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl274,800,048 - 74,838,671 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1274,800,048 - 74,838,923 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2275,343,893 - 75,381,632 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATCAY
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.163,643,754 - 3,678,864 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl63,643,793 - 3,675,263 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660814,568,362 - 4,610,421 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000017577   ⟹   ENSHGLP00000017404
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248286,471,460 - 6,495,142 (+)Ensembl
RefSeq Acc Id: XM_004865866   ⟹   XP_004865923
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248286,477,906 - 6,495,142 (+)NCBI
RefSeq Acc Id: XM_004865867   ⟹   XP_004865924
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248286,471,452 - 6,495,142 (+)NCBI
RefSeq Acc Id: XM_013065943   ⟹   XP_012921397
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248286,471,452 - 6,495,142 (+)NCBI
RefSeq Acc Id: XM_021244939   ⟹   XP_021100598
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248286,478,357 - 6,495,142 (+)NCBI
RefSeq Acc Id: XM_021244940   ⟹   XP_021100599
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248286,471,452 - 6,495,142 (+)NCBI
RefSeq Acc Id: XM_021244941   ⟹   XP_021100600
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248286,471,452 - 6,495,142 (+)NCBI
RefSeq Acc Id: XR_002389579
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248286,478,354 - 6,488,973 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_012921397   ⟸   XM_013065943
- Peptide Label: isoform X3
- UniProtKB: A0A0N8ETY9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021100600   ⟸   XM_021244941
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004865924   ⟸   XM_004865867
- Peptide Label: isoform X3
- UniProtKB: A0A0N8ETY9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021100599   ⟸   XM_021244940
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004865923   ⟸   XM_004865866
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021100598   ⟸   XM_021244939
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000017404   ⟸   ENSHGLT00000017577


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012464 Ensembl, ENTREZGENE
  ENSHGLG00100000774 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000017577 ENTREZGENE
  ENSHGLT00100000988 UniProtKB/TrEMBL
Gene3D-CATH 3.40.525.10 UniProtKB/TrEMBL
InterPro Bcl2-/adenovirus-E1B UniProtKB/TrEMBL
  CRAL-TRIO_dom UniProtKB/TrEMBL
  CRAL-TRIO_dom_sf UniProtKB/TrEMBL
NCBI Gene Atcay ENTREZGENE
PANTHER BNIP - RELATED UniProtKB/TrEMBL
  CAYTAXIN UniProtKB/TrEMBL
Pfam BNIP2 UniProtKB/TrEMBL
  CRAL_TRIO_2 UniProtKB/TrEMBL
PROSITE CRAL_TRIO UniProtKB/TrEMBL
SMART SEC14 UniProtKB/TrEMBL
Superfamily-SCOP SSF52087 UniProtKB/TrEMBL
UniProt A0A0N8ETY9 ENTREZGENE, UniProtKB/TrEMBL