Atcay (ATCAY kinesin light chain interacting caytaxin) - Rat Genome Database

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Gene: Atcay (ATCAY kinesin light chain interacting caytaxin) Ictidomys tridecemlineatus
Analyze
Symbol: Atcay
Name: ATCAY kinesin light chain interacting caytaxin
RGD ID: 12510032
Description: ENCODES a protein that exhibits kinesin binding (inferred); INVOLVED IN mitochondrion distribution (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Ataxia (ortholog); Cayman type cerebellar ataxia (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATCAY, caytaxin; ATCAY, caytaxin, transcript variant X1; ATCAY, caytaxin, transcript variant X2; ATCAY, caytaxin, transcript variant X3; caytaxin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118215,608,298 - 215,638,037 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365882,196,580 - 2,229,202 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365882,196,556 - 2,226,489 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Atcay
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118215,608,298 - 215,638,037 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365882,196,580 - 2,229,202 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365882,196,556 - 2,226,489 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATCAY
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,880,685 - 3,928,082 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl193,879,864 - 3,928,082 (+)EnsemblGRCh38hg38GRCh38
GRCh37193,880,683 - 3,928,080 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,831,639 - 3,879,080 (+)NCBINCBI36Build 36hg18NCBI36
Build 34193,831,675 - 3,877,004NCBI
Celera193,818,196 - 3,865,544 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef193,644,535 - 3,691,726 (+)NCBIHuRef
CHM1_1193,880,227 - 3,927,684 (+)NCBICHM1_1
T2T-CHM13v2.0193,859,875 - 3,907,372 (+)NCBIT2T-CHM13v2.0
Atcay
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,040,338 - 81,067,037 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1081,040,342 - 81,066,667 (-)EnsemblGRCm39 Ensembl
GRCm381081,204,504 - 81,230,845 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,204,508 - 81,230,833 (-)EnsemblGRCm38mm10GRCm38
MGSCv371080,667,258 - 80,693,524 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361080,607,642 - 80,633,908 (-)NCBIMGSCv36mm8
Celera1082,224,870 - 82,251,132 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Atcay
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr879,138,485 - 9,162,249 (+)NCBIGRCr8
mRatBN7.278,487,763 - 8,511,527 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,487,763 - 8,512,663 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx711,371,965 - 11,396,564 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0713,247,448 - 13,272,043 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0711,114,964 - 11,138,493 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0711,356,017 - 11,379,782 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,356,118 - 11,380,913 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0711,523,425 - 11,547,188 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.479,971,563 - 9,995,528 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.179,971,756 - 10,001,916 (+)NCBI
Celera76,676,006 - 6,699,559 (+)NCBICelera
Cytogenetic Map7q11NCBI
Atcay
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554955,715,850 - 5,741,202 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554955,715,943 - 5,741,202 (+)NCBIChiLan1.0ChiLan1.0
ATCAY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2208,277,727 - 8,325,463 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,509,355 - 7,557,069 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0192,905,615 - 2,953,079 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1193,854,423 - 3,900,175 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,854,423 - 3,900,175 (+)Ensemblpanpan1.1panPan2
ATCAY
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12055,610,124 - 55,641,879 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2055,612,260 - 55,641,832 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2055,335,634 - 55,367,384 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02056,270,246 - 56,302,013 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2056,270,249 - 56,302,650 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12055,326,177 - 55,357,852 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02055,807,965 - 55,839,664 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02056,006,705 - 56,038,464 (-)NCBIUU_Cfam_GSD_1.0
ATCAY
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl274,800,048 - 74,838,671 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1274,800,048 - 74,838,923 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2275,343,893 - 75,381,632 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATCAY
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.163,643,754 - 3,678,864 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl63,643,793 - 3,675,263 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660814,568,362 - 4,610,421 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atcay
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248286,471,460 - 6,495,142 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248286,471,452 - 6,495,142 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000028154   ⟹   ENSSTOP00000022128
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365882,196,580 - 2,229,202 (+)Ensembl
RefSeq Acc Id: XM_005332033   ⟹   XP_005332090
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118215,608,298 - 215,638,037 (-)NCBI
SpeTri2.0NW_0049365882,196,560 - 2,226,489 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040291127   ⟹   XP_040147061
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118215,612,506 - 215,638,037 (-)NCBI
RefSeq Acc Id: XM_040291128   ⟹   XP_040147062
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118215,614,402 - 215,638,037 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005332090 (Get FASTA)   NCBI Sequence Viewer  
  XP_040147061 (Get FASTA)   NCBI Sequence Viewer  
  XP_040147062 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000022128.2
GenBank Protein KAG3280707 (Get FASTA)   NCBI Sequence Viewer  
  KAG3280708 (Get FASTA)   NCBI Sequence Viewer  
  KAG3280709 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005332090   ⟸   XM_005332033
- Peptide Label: isoform X1
- UniProtKB: I3NCN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040147061   ⟸   XM_040291127
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040147062   ⟸   XM_040291128
- Peptide Label: isoform X3
Ensembl Acc Id: ENSSTOP00000022128   ⟸   ENSSTOT00000028154
Protein Domains
CRAL-TRIO


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026376 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028154.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.525.10 UniProtKB/TrEMBL
InterPro Bcl2-/adenovirus-E1B UniProtKB/TrEMBL
  CRAL-TRIO_dom UniProtKB/TrEMBL
  CRAL-TRIO_dom_sf UniProtKB/TrEMBL
NCBI Gene Atcay ENTREZGENE
PANTHER BNIP - RELATED UniProtKB/TrEMBL
  CAYTAXIN UniProtKB/TrEMBL
Pfam BNIP2 UniProtKB/TrEMBL
  CRAL_TRIO_2 UniProtKB/TrEMBL
PROSITE CRAL_TRIO UniProtKB/TrEMBL
SMART SEC14 UniProtKB/TrEMBL
Superfamily-SCOP SSF52087 UniProtKB/TrEMBL
UniProt I3NCN1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-05 Atcay  ATCAY kinesin light chain interacting caytaxin    ATCAY, caytaxin  Symbol and/or name change 5135510 APPROVED