Cped1 (cadherin like and PC-esterase domain containing 1) - Rat Genome Database

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Gene: Cped1 (cadherin like and PC-esterase domain containing 1) Heterocephalus glaber
Analyze
Symbol: Cped1
Name: cadherin like and PC-esterase domain containing 1
RGD ID: 18919859
Description: ASSOCIATED WITH Creutzfeldt-Jakob disease (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cadherin-like and PC-esterase domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478314,790,540 - 15,085,263 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478314,791,083 - 15,085,241 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Cped1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478314,790,540 - 15,085,263 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478314,791,083 - 15,085,241 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CPED1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387120,988,711 - 121,297,442 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7120,988,697 - 121,297,442 (+)EnsemblGRCh38hg38GRCh38
GRCh377120,628,765 - 120,937,496 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367120,415,987 - 120,724,734 (+)NCBINCBI36Build 36hg18NCBI36
Celera7115,438,272 - 115,746,685 (+)NCBICelera
Cytogenetic Map7q31.31NCBI
HuRef7114,991,976 - 115,300,687 (+)NCBIHuRef
CHM1_17120,562,065 - 120,870,800 (+)NCBICHM1_1
T2T-CHM13v2.07122,304,057 - 122,612,831 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27120,023,845 - 120,332,239 (+)NCBI
Cped1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39621,985,875 - 22,256,406 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl621,985,915 - 22,256,403 (+)EnsemblGRCm39 Ensembl
GRCm38621,985,710 - 22,256,407 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl621,985,916 - 22,256,404 (+)EnsemblGRCm38mm10GRCm38
MGSCv37621,935,910 - 22,205,606 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36621,935,911 - 22,205,607 (+)NCBIMGSCv36mm8
Celera622,039,934 - 22,310,126 (+)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map68.86NCBI
Cped1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8451,482,497 - 51,755,440 (+)NCBIGRCr8
mRatBN7.2450,516,712 - 50,789,651 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl450,516,819 - 50,788,674 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0449,055,988 - 49,333,729 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl449,056,010 - 49,333,304 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0448,850,970 - 49,127,847 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4448,295,056 - 48,568,314 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera445,723,759 - 45,996,332 (+)NCBICelera
Cytogenetic Map4q22NCBI
Cped1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554792,782,059 - 3,039,030 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554792,782,057 - 3,039,440 (+)NCBIChiLan1.0ChiLan1.0
CPED1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26157,858,549 - 158,171,351 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan179,868,929 - 10,184,088 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07112,997,867 - 113,240,213 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17125,684,738 - 125,997,449 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7125,685,423 - 125,996,060 (+)Ensemblpanpan1.1panPan2
CPED1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11459,104,501 - 59,364,820 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1459,104,496 - 59,364,695 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1458,521,215 - 58,782,351 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01459,140,853 - 59,401,889 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1459,140,818 - 59,400,275 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11459,234,426 - 59,495,308 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01458,857,948 - 59,120,135 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01459,236,763 - 59,498,137 (+)NCBIUU_Cfam_GSD_1.0
Cped1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511848,061,285 - 48,311,206 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366053,892,718 - 4,141,659 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366053,892,728 - 4,142,538 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPED1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1825,655,735 - 25,937,232 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11825,655,730 - 25,937,923 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21827,260,306 - 27,541,802 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CPED1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12189,813,375 - 90,121,527 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2189,814,332 - 90,123,795 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604213,440,952 - 13,757,412 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004856454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002386701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002386702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01060275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01060276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01060277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01060278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01060279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01060280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01060281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01060282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01060283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01060284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01060285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01060286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01060287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01060288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01060289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01004763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH171135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000011251   ⟹   ENSHGLP00000011127
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478314,790,540 - 15,085,263 (-)Ensembl
RefSeq Acc Id: XM_004856454   ⟹   XP_004856511
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478314,791,083 - 15,085,240 (-)NCBI
RefSeq Acc Id: XM_021237581   ⟹   XP_021093240
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478314,791,083 - 15,085,240 (-)NCBI
RefSeq Acc Id: XR_002386701
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478314,792,767 - 15,085,241 (-)NCBI
RefSeq Acc Id: XR_002386702
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478314,792,767 - 15,085,241 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004856511 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093240 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB10920 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011127
GenBank Protein JAN98869 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021093240   ⟸   XM_021237581
- Peptide Label: isoform X2
- UniProtKB: G5BNQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856511   ⟸   XM_004856454
- Peptide Label: isoform X1
- UniProtKB: G5BNQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000011127   ⟸   ENSHGLT00000011251


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007984 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000011251 ENTREZGENE
InterPro Cadherin-like_b_sandwich UniProtKB/TrEMBL
NCBI Gene Cped1 ENTREZGENE
PANTHER CADHERIN-LIKE AND PC-ESTERASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  CADHERIN-LIKE AND PC-ESTERASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam Cadherin-like UniProtKB/TrEMBL
UniProt G5BNQ9 ENTREZGENE, UniProtKB/TrEMBL