CPED1 (cadherin like and PC-esterase domain containing 1) - Rat Genome Database

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Gene: CPED1 (cadherin like and PC-esterase domain containing 1) Chlorocebus sabaeus
Analyze
Symbol: CPED1
Name: cadherin like and PC-esterase domain containing 1
RGD ID: 18411794
Description: ASSOCIATED WITH Creutzfeldt-Jakob disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN endoplasmic reticulum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cadherin-like and PC-esterase domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12189,813,375 - 90,121,527 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2189,814,332 - 90,123,795 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604213,440,952 - 13,757,412 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
CPED1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12189,813,375 - 90,121,527 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2189,814,332 - 90,123,795 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604213,440,952 - 13,757,412 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CPED1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387120,988,711 - 121,297,442 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7120,988,697 - 121,297,442 (+)EnsemblGRCh38hg38GRCh38
GRCh377120,628,765 - 120,937,496 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367120,415,987 - 120,724,734 (+)NCBINCBI36Build 36hg18NCBI36
Celera7115,438,272 - 115,746,685 (+)NCBICelera
Cytogenetic Map7q31.31NCBI
HuRef7114,991,976 - 115,300,687 (+)NCBIHuRef
CHM1_17120,562,065 - 120,870,800 (+)NCBICHM1_1
T2T-CHM13v2.07122,304,057 - 122,612,831 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27120,023,845 - 120,332,239 (+)NCBI
Cped1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39621,985,875 - 22,256,406 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl621,985,915 - 22,256,403 (+)EnsemblGRCm39 Ensembl
GRCm38621,985,710 - 22,256,407 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl621,985,916 - 22,256,404 (+)EnsemblGRCm38mm10GRCm38
MGSCv37621,935,910 - 22,205,606 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36621,935,911 - 22,205,607 (+)NCBIMGSCv36mm8
Celera622,039,934 - 22,310,126 (+)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map68.86NCBI
Cped1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8451,482,497 - 51,755,440 (+)NCBIGRCr8
mRatBN7.2450,516,712 - 50,789,651 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl450,516,819 - 50,788,674 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0449,055,988 - 49,333,729 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl449,056,010 - 49,333,304 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0448,850,970 - 49,127,847 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4448,295,056 - 48,568,314 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera445,723,759 - 45,996,332 (+)NCBICelera
Cytogenetic Map4q22NCBI
Cped1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554792,782,059 - 3,039,030 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554792,782,057 - 3,039,440 (+)NCBIChiLan1.0ChiLan1.0
CPED1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26157,858,549 - 158,171,351 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan179,868,929 - 10,184,088 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07112,997,867 - 113,240,213 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17125,684,738 - 125,997,449 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7125,685,423 - 125,996,060 (+)Ensemblpanpan1.1panPan2
CPED1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11459,104,501 - 59,364,820 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1459,104,496 - 59,364,695 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1458,521,215 - 58,782,351 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01459,140,853 - 59,401,889 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1459,140,818 - 59,400,275 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11459,234,426 - 59,495,308 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01458,857,948 - 59,120,135 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01459,236,763 - 59,498,137 (+)NCBIUU_Cfam_GSD_1.0
Cped1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511848,061,285 - 48,311,206 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366053,892,718 - 4,141,659 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366053,892,728 - 4,142,538 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPED1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1825,655,735 - 25,937,232 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11825,655,730 - 25,937,923 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21827,260,306 - 27,541,802 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Cped1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478314,790,540 - 15,085,263 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478314,791,083 - 15,085,241 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 16 19 1
Low 20 1 59
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007982713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000008730   ⟹   ENSCSAP00000006868
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2189,814,332 - 90,123,795 (+)Ensembl
RefSeq Acc Id: XM_007982713   ⟹   XP_007980904
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12189,813,378 - 90,121,527 (+)NCBI
Vero_WHO_p1.0NW_02366604213,440,952 - 13,757,407 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007982718   ⟹   XP_007980909
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12189,813,378 - 90,121,527 (+)NCBI
Vero_WHO_p1.0NW_02366604213,440,955 - 13,757,408 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007982720   ⟹   XP_007980911
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12189,813,379 - 90,121,527 (+)NCBI
Vero_WHO_p1.0NW_02366604213,440,952 - 13,757,408 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007982721   ⟹   XP_007980912
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12189,813,379 - 90,094,574 (+)NCBI
Vero_WHO_p1.0NW_02366604213,468,785 - 13,757,408 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007982724   ⟹   XP_007980915
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12189,813,381 - 90,088,449 (+)NCBI
Vero_WHO_p1.0NW_02366604213,474,982 - 13,757,408 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038004435   ⟹   XP_037860363
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604213,466,368 - 13,757,412 (-)NCBI
RefSeq Acc Id: XM_038004436   ⟹   XP_037860364
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604213,466,368 - 13,757,412 (-)NCBI
RefSeq Acc Id: XM_038004437   ⟹   XP_037860365
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604213,466,368 - 13,757,412 (-)NCBI
RefSeq Acc Id: XM_038004438   ⟹   XP_037860366
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604213,466,368 - 13,757,412 (-)NCBI
RefSeq Acc Id: XM_038004439   ⟹   XP_037860367
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604213,495,769 - 13,757,406 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_007980904   ⟸   XM_007982713
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RE29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007980909   ⟸   XM_007982718
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RE29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007980911   ⟸   XM_007982720
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RE29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007980912   ⟸   XM_007982721
- Peptide Label: isoform X6
- UniProtKB: A0A0D9RE29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007980915   ⟸   XM_007982724
- Peptide Label: isoform X7
- UniProtKB: A0A0D9RE29 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000006868   ⟸   ENSCSAT00000008730
RefSeq Acc Id: XP_037860365   ⟸   XM_038004437
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RE29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037860364   ⟸   XM_038004436
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RE29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037860363   ⟸   XM_038004435
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RE29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037860366   ⟸   XM_038004438
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RE29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037860367   ⟸   XM_038004439
- Peptide Label: isoform X8


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010728 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008730.1 UniProtKB/TrEMBL
InterPro Cadherin-like_b_sandwich UniProtKB/TrEMBL
KEGG Report csab:103226793 UniProtKB/TrEMBL
NCBI Gene CPED1 ENTREZGENE
PANTHER CADHERIN-LIKE AND PC-ESTERASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  CADHERIN-LIKE AND PC-ESTERASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam Cadherin-like UniProtKB/TrEMBL
UniProt A0A0D9RE29 ENTREZGENE, UniProtKB/TrEMBL