Prrx1 (paired related homeobox 1) - Rat Genome Database

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Gene: Prrx1 (paired related homeobox 1) Heterocephalus glaber
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Symbol: Prrx1
Name: paired related homeobox 1
RGD ID: 18918225
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN artery morphogenesis (ortholog); cartilage development (ortholog); embryonic cranial skeleton morphogenesis (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); agnathia-otocephaly complex (ortholog); atrial fibrillation (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Paired mesoderm homeobox protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248268,361,033 - 8,435,656 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248268,361,039 - 8,435,488 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Prrx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248268,361,033 - 8,435,656 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248268,361,039 - 8,435,488 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PRRX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381170,662,768 - 170,739,421 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1170,662,728 - 170,739,421 (+)EnsemblGRCh38hg38GRCh38
GRCh371170,633,272 - 170,708,562 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361168,899,937 - 168,975,165 (+)NCBINCBI36Build 36hg18NCBI36
Celera1143,742,929 - 143,818,153 (+)NCBICelera
Cytogenetic Map1q24.2NCBI
HuRef1141,857,178 - 141,932,397 (+)NCBIHuRef
CHM1_11172,055,608 - 172,130,854 (+)NCBICHM1_1
T2T-CHM13v2.01170,018,992 - 170,095,719 (+)NCBIT2T-CHM13v2.0
Prrx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391163,072,688 - 163,142,714 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1163,072,688 - 163,141,279 (-)EnsemblGRCm39 Ensembl
GRCm381163,245,119 - 163,315,145 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1163,245,119 - 163,313,710 (-)EnsemblGRCm38mm10GRCm38
MGSCv371165,175,250 - 165,243,781 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361165,081,794 - 165,150,325 (-)NCBIMGSCv36mm8
Celera1165,686,221 - 165,753,419 (-)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map170.53NCBI
Prrx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81378,136,783 - 78,205,379 (-)NCBIGRCr8
mRatBN7.21375,600,777 - 75,671,896 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1375,601,706 - 75,670,866 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1378,222,273 - 78,288,991 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01379,522,828 - 79,589,543 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01376,777,727 - 76,846,595 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01381,147,038 - 81,215,559 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1381,147,348 - 81,214,546 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01386,039,713 - 86,107,919 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41378,961,648 - 79,028,882 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11378,975,835 - 79,043,069 (-)NCBI
Celera1375,343,320 - 75,409,614 (-)NCBICelera
Cytogenetic Map13q22NCBI
Prrx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554626,919,899 - 6,991,733 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554626,919,905 - 6,991,733 (+)NCBIChiLan1.0ChiLan1.0
PRRX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2179,023,160 - 79,101,125 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1178,696,682 - 78,773,306 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01146,151,633 - 146,227,926 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11149,867,365 - 149,943,810 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1149,867,634 - 149,943,810 (+)Ensemblpanpan1.1panPan2
PRRX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1728,065,570 - 28,138,734 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl728,068,711 - 28,138,787 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha727,598,170 - 27,671,127 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0727,867,506 - 27,940,906 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl727,867,529 - 27,939,818 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1727,717,090 - 27,790,221 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0727,751,956 - 27,825,122 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0727,988,098 - 28,061,291 (-)NCBIUU_Cfam_GSD_1.0
Prrx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934498,358,502 - 98,426,095 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648116,205,240 - 16,272,850 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648116,208,243 - 16,272,836 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRRX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl480,427,687 - 80,501,646 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1480,427,682 - 80,502,689 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2487,973,831 - 88,044,655 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRRX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12558,347,686 - 58,423,454 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2558,347,704 - 58,421,980 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605559,994,168 - 60,070,286 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000002831   ⟹   ENSHGLP00000002777
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248268,361,033 - 8,435,656 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000002832   ⟹   ENSHGLP00000002778
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248268,361,033 - 8,435,656 (+)Ensembl
RefSeq Acc Id: XM_004865244   ⟹   XP_004865301
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248268,361,039 - 8,435,488 (+)NCBI
RefSeq Acc Id: XM_021244676   ⟹   XP_021100335
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248268,361,039 - 8,435,488 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004865301 (Get FASTA)   NCBI Sequence Viewer  
  XP_021100335 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB13034 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002777
  ENSHGLP00000002778
RefSeq Acc Id: XP_021100335   ⟸   XM_021244676
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004865301   ⟸   XM_004865244
- Peptide Label: isoform X1
Ensembl Acc Id: ENSHGLP00000002777   ⟸   ENSHGLT00000002831
Ensembl Acc Id: ENSHGLP00000002778   ⟸   ENSHGLT00000002832


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002089 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002831 ENTREZGENE
  ENSHGLT00000002832 ENTREZGENE
NCBI Gene Prrx1 ENTREZGENE