Rgs16 (regulator of G protein signaling 16) - Rat Genome Database

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Gene: Rgs16 (regulator of G protein signaling 16) Heterocephalus glaber
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Symbol: Rgs16
Name: regulator of G protein signaling 16
RGD ID: 18917990
Description: ENCODES a protein that exhibits GTPase activator activity (inferred); INVOLVED IN positive regulation of GTPase activity (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: regulator of G-protein signaling 16
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462481411,249,335 - 11,255,113 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462481411,249,448 - 11,254,728 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Rgs16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462481411,249,335 - 11,255,113 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462481411,249,448 - 11,254,728 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RGS16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381182,598,623 - 182,604,389 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1182,598,623 - 182,604,389 (-)EnsemblGRCh38hg38GRCh38
GRCh371182,567,758 - 182,573,524 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361180,834,381 - 180,840,171 (-)NCBINCBI36Build 36hg18NCBI36
Build 341179,299,415 - 179,305,200NCBI
Celera1155,678,992 - 155,684,782 (-)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1153,804,224 - 153,810,014 (-)NCBIHuRef
CHM1_11183,991,292 - 183,997,081 (-)NCBICHM1_1
T2T-CHM13v2.01181,958,121 - 181,963,886 (-)NCBIT2T-CHM13v2.0
Rgs16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,616,099 - 153,621,212 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1153,616,095 - 153,621,214 (+)EnsemblGRCm39 Ensembl
GRCm381153,740,353 - 153,745,468 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,740,349 - 153,745,468 (+)EnsemblGRCm38mm10GRCm38
MGSCv371155,587,483 - 155,592,598 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361155,502,566 - 155,507,684 (+)NCBIMGSCv36mm8
Celera1156,172,183 - 156,177,294 (+)NCBICelera
Cytogenetic Map1G3NCBI
cM Map165.43NCBI
Rgs16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81368,421,480 - 68,443,312 (+)NCBIGRCr8
mRatBN7.21365,887,668 - 65,892,862 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1365,887,530 - 65,892,857 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1368,488,860 - 68,492,298 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01369,779,050 - 69,782,494 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01367,032,029 - 67,035,429 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01371,163,411 - 71,185,147 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1371,179,910 - 71,185,216 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01376,128,653 - 76,150,399 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41368,807,863 - 68,811,307 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1365,788,298 - 65,791,737 (+)NCBICelera
Cytogenetic Map13q21NCBI
Rgs16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540621,439,272 - 21,445,038 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540621,439,536 - 21,444,822 (-)NCBIChiLan1.0ChiLan1.0
RGS16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2167,124,524 - 67,130,751 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,808,016 - 66,814,241 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01158,117,257 - 158,123,031 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11161,768,921 - 161,774,709 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,765,595 - 161,774,709 (-)Ensemblpanpan1.1panPan2
RGS16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1716,009,283 - 16,015,228 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl716,009,271 - 16,015,597 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha715,595,717 - 15,601,663 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0715,738,716 - 15,744,653 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl715,739,616 - 15,744,690 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1715,650,339 - 15,656,274 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0715,758,624 - 15,764,560 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0715,887,673 - 15,893,854 (-)NCBIUU_Cfam_GSD_1.0
Rgs16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934489,300,380 - 89,305,804 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364817,147,013 - 7,152,565 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364817,147,147 - 7,152,555 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RGS16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9123,913,173 - 123,918,871 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19123,913,179 - 123,919,119 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29136,173,524 - 136,175,853 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RGS16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12546,764,097 - 46,769,895 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2546,764,134 - 46,769,896 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605547,982,051 - 47,987,847 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000006330   ⟹   ENSHGLP00000006252
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462481411,249,335 - 11,255,113 (+)Ensembl
RefSeq Acc Id: XM_004862829   ⟹   XP_004862886
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462481411,249,448 - 11,254,728 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004862886 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB07552 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006252
  ENSHGLP00100012339
GenBank Protein JAN95938 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004862886   ⟸   XM_004862829
- UniProtKB: G5BE41 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000006252   ⟸   ENSHGLT00000006330


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004562 Ensembl, ENTREZGENE
  ENSHGLG00100009136 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000006330 ENTREZGENE
  ENSHGLT00100012482 UniProtKB/TrEMBL
Gene3D-CATH 1.10.167.10 UniProtKB/TrEMBL
  1.10.196.10 UniProtKB/TrEMBL
InterPro RGS UniProtKB/TrEMBL
  RGS_sf UniProtKB/TrEMBL
  RGS_subdom1/3 UniProtKB/TrEMBL
  RGS_subdomain_2 UniProtKB/TrEMBL
KEGG Report hgl:101723551 UniProtKB/TrEMBL
NCBI Gene Rgs16 ENTREZGENE
PANTHER REGULATOR OF G PROTEIN SIGNALING UniProtKB/TrEMBL
  REGULATOR OF G-PROTEIN SIGNALING 16 UniProtKB/TrEMBL
Pfam RGS UniProtKB/TrEMBL
PRINTS RGSPROTEIN UniProtKB/TrEMBL
PROSITE RGS UniProtKB/TrEMBL
SMART RGS UniProtKB/TrEMBL
Superfamily-SCOP SSF48097 UniProtKB/TrEMBL
UniProt G5BE41 ENTREZGENE, UniProtKB/TrEMBL