Exoc3l2 (exocyst complex component 3 like 2) - Rat Genome Database

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Gene: Exoc3l2 (exocyst complex component 3 like 2) Heterocephalus glaber
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Symbol: Exoc3l2
Name: exocyst complex component 3 like 2
RGD ID: 18917153
Description: ENCODES a protein that exhibits SNARE binding (inferred); INVOLVED IN in utero embryonic development (ortholog); ASSOCIATED WITH BRAIN MALFORMATION RENAL SYNDROME (ortholog); Meckel syndrome (ortholog); FOUND IN exocyst (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: exocyst complex component 3-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249072,159,935 - 2,179,736 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249072,158,565 - 2,172,103 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
exocyst  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Exoc3l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249072,159,935 - 2,179,736 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249072,158,565 - 2,172,103 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
EXOC3L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,212,370 - 45,245,407 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,212,370 - 45,245,407 (-)EnsemblGRCh38hg38GRCh38
GRCh371945,715,628 - 45,748,665 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,407,719 - 50,429,309 (-)NCBINCBI36Build 36hg18NCBI36
Celera1942,521,452 - 42,543,042 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,147,898 - 42,169,431 (-)NCBIHuRef
CHM1_11945,719,170 - 45,740,768 (-)NCBICHM1_1
T2T-CHM13v2.01948,039,015 - 48,072,079 (-)NCBIT2T-CHM13v2.0
Exoc3l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,197,212 - 19,230,687 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,197,256 - 19,230,687 (+)EnsemblGRCm39 Ensembl
GRCm38719,463,287 - 19,496,762 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,463,331 - 19,496,762 (+)EnsemblGRCm38mm10GRCm38
MGSCv37720,063,253 - 20,082,111 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,647,578 - 18,655,282 (+)NCBIMGSCv36mm8
Celera716,875,415 - 16,902,567 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.92NCBI
Exoc3l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,241,784 - 88,273,352 (+)NCBIGRCr8
mRatBN7.2179,113,784 - 79,145,359 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,112,506 - 79,145,465 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0180,372,708 - 80,404,275 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,383,050 - 80,404,290 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,638,786 - 81,670,432 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera173,573,529 - 73,605,038 (+)NCBICelera
Cytogenetic Map1q21NCBI
Exoc3l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555552,261,241 - 2,277,340 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555552,260,885 - 2,281,784 (-)NCBIChiLan1.0ChiLan1.0
EXOC3L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22051,372,481 - 51,403,276 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,235,946 - 53,274,660 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01942,161,728 - 42,195,014 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,766,031 - 50,783,387 (-)NCBIpanpan1.1PanPan1.1panPan2
EXOC3L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,265,054 - 110,277,895 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,265,043 - 110,277,519 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,738,722 - 109,759,777 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,787,066 - 110,808,185 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1110,787,048 - 110,807,809 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,462,673 - 110,483,748 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,097,070 - 110,118,125 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,966,439 - 110,987,538 (+)NCBIUU_Cfam_GSD_1.0
LOC101970976
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,391,924 - 17,405,080 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367061,739,267 - 1,752,418 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOC3L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,638,065 - 51,668,469 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,638,058 - 51,661,716 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
EXOC3L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1638,670,789 - 38,706,058 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607318,266,461 - 18,299,547 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000004239   ⟹   ENSHGLP00000004181
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249072,159,935 - 2,179,736 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000004240   ⟹   ENSHGLP00000004182
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249072,159,935 - 2,175,279 (-)Ensembl
RefSeq Acc Id: XM_004873169   ⟹   XP_004873226
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249072,158,565 - 2,172,098 (-)NCBI
RefSeq Acc Id: XM_013068626   ⟹   XP_012924080
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249072,158,565 - 2,172,096 (-)NCBI
RefSeq Acc Id: XM_021250915   ⟹   XP_021106574
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249072,158,565 - 2,172,103 (-)NCBI
RefSeq Acc Id: XM_021250916   ⟹   XP_021106575
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249072,158,565 - 2,172,101 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004873226 (Get FASTA)   NCBI Sequence Viewer  
  XP_012924080 (Get FASTA)   NCBI Sequence Viewer  
  XP_021106574 (Get FASTA)   NCBI Sequence Viewer  
  XP_021106575 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021106574   ⟸   XM_021250915
- Peptide Label: isoform X1
- UniProtKB: G5BKT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021106575   ⟸   XM_021250916
- Peptide Label: isoform X3
- UniProtKB: G5BKT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004873226   ⟸   XM_004873169
- Peptide Label: isoform X2
- UniProtKB: G5BKT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924080   ⟸   XM_013068626
- Peptide Label: isoform X4
- UniProtKB: G5BKT8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000004181   ⟸   ENSHGLT00000004239
Ensembl Acc Id: ENSHGLP00000004182   ⟸   ENSHGLT00000004240


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003068 Ensembl
Gene3D-CATH Exocyst complex component Sec6, C-terminal domain UniProtKB/TrEMBL
InterPro EXOC3/Sec6 UniProtKB/TrEMBL
  EXOC3/Sec6_C UniProtKB/TrEMBL
NCBI Gene Exoc3l2 ENTREZGENE
PANTHER EXOCYST COMPLEX COMPONENT 3-LIKE 2 UniProtKB/TrEMBL
  EXOCYST COMPLEX COMPONENT SEC6-RELATED UniProtKB/TrEMBL
Pfam Sec6 UniProtKB/TrEMBL
UniProt G5BKT8 ENTREZGENE, UniProtKB/TrEMBL