EXOC3L2 (exocyst complex component 3 like 2) - Rat Genome Database

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Gene: EXOC3L2 (exocyst complex component 3 like 2) Canis lupus familiaris
Analyze
Symbol: EXOC3L2
Name: exocyst complex component 3 like 2
RGD ID: 12053679
Description: ENCODES a protein that exhibits SNARE binding (inferred); INVOLVED IN in utero embryonic development (ortholog); ASSOCIATED WITH genetic disease (ortholog); Meckel syndrome (ortholog); FOUND IN exocyst (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: exocyst complex component 3-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,265,054 - 110,277,895 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,265,043 - 110,277,519 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,738,722 - 109,759,777 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,787,066 - 110,808,185 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1110,787,048 - 110,807,809 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,462,673 - 110,483,748 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,097,070 - 110,118,125 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,966,439 - 110,987,538 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
exocyst  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EXOC3L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,265,054 - 110,277,895 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,265,043 - 110,277,519 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,738,722 - 109,759,777 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,787,066 - 110,808,185 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1110,787,048 - 110,807,809 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,462,673 - 110,483,748 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,097,070 - 110,118,125 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,966,439 - 110,987,538 (+)NCBIUU_Cfam_GSD_1.0
EXOC3L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,212,370 - 45,245,407 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,212,370 - 45,245,407 (-)EnsemblGRCh38hg38GRCh38
GRCh371945,715,628 - 45,748,665 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,407,719 - 50,429,309 (-)NCBINCBI36Build 36hg18NCBI36
Celera1942,521,452 - 42,543,042 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,147,898 - 42,169,431 (-)NCBIHuRef
CHM1_11945,719,170 - 45,740,768 (-)NCBICHM1_1
T2T-CHM13v2.01948,039,015 - 48,072,079 (-)NCBIT2T-CHM13v2.0
Exoc3l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,197,212 - 19,230,687 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,197,256 - 19,230,687 (+)EnsemblGRCm39 Ensembl
GRCm38719,463,287 - 19,496,762 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,463,331 - 19,496,762 (+)EnsemblGRCm38mm10GRCm38
MGSCv37720,063,253 - 20,082,111 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,647,578 - 18,655,282 (+)NCBIMGSCv36mm8
Celera716,875,415 - 16,902,567 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.92NCBI
Exoc3l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,241,784 - 88,273,352 (+)NCBIGRCr8
mRatBN7.2179,113,784 - 79,145,359 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,112,506 - 79,145,465 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0180,372,708 - 80,404,275 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,383,050 - 80,404,290 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,638,786 - 81,670,432 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera173,573,529 - 73,605,038 (+)NCBICelera
Cytogenetic Map1q21NCBI
Exoc3l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555552,261,241 - 2,277,340 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555552,260,885 - 2,281,784 (-)NCBIChiLan1.0ChiLan1.0
EXOC3L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22051,372,481 - 51,403,276 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,235,946 - 53,274,660 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01942,161,728 - 42,195,014 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,766,031 - 50,783,387 (-)NCBIpanpan1.1PanPan1.1panPan2
LOC101970976
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,391,924 - 17,405,080 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367061,739,267 - 1,752,418 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOC3L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,638,065 - 51,668,469 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,638,058 - 51,661,716 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
EXOC3L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1638,670,789 - 38,706,058 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607318,266,461 - 18,299,547 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Exoc3l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249072,159,935 - 2,179,736 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249072,158,565 - 2,172,103 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EXOC3L2
157 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 13 6 3 5
Low 5 2 9 6 6 6 5 8 5 6
Below cutoff 3 6 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038427629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038467872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038467873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038467874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038467875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038528591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038528592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038528593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038528594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038592872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038656675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038656676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038656677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038656679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_541565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000007307   ⟹   ENSCAFP00000006769
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1110,265,043 - 110,277,519 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845010209   ⟹   ENSCAFP00845007955
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1110,787,048 - 110,807,809 (+)Ensembl
RefSeq Acc Id: XM_038427629   ⟹   XP_038283557
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1109,738,722 - 109,759,777 (+)NCBI
RefSeq Acc Id: XM_038467872   ⟹   XP_038323800
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11110,462,697 - 110,483,748 (+)NCBI
RefSeq Acc Id: XM_038467873   ⟹   XP_038323801
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11110,462,943 - 110,483,748 (+)NCBI
RefSeq Acc Id: XM_038467874   ⟹   XP_038323802
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11110,462,673 - 110,483,748 (+)NCBI
RefSeq Acc Id: XM_038467875   ⟹   XP_038323803
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11110,465,657 - 110,483,748 (+)NCBI
RefSeq Acc Id: XM_038528591   ⟹   XP_038384519
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01110,966,463 - 110,987,538 (+)NCBI
RefSeq Acc Id: XM_038528592   ⟹   XP_038384520
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01110,966,709 - 110,987,538 (+)NCBI
RefSeq Acc Id: XM_038528593   ⟹   XP_038384521
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01110,966,439 - 110,987,538 (+)NCBI
RefSeq Acc Id: XM_038528594   ⟹   XP_038384522
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01110,969,431 - 110,987,538 (+)NCBI
RefSeq Acc Id: XM_038592872   ⟹   XP_038448800
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01110,097,070 - 110,118,125 (+)NCBI
RefSeq Acc Id: XM_038656675   ⟹   XP_038512603
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01110,787,090 - 110,808,185 (+)NCBI
RefSeq Acc Id: XM_038656676   ⟹   XP_038512604
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01110,787,336 - 110,808,185 (+)NCBI
RefSeq Acc Id: XM_038656677   ⟹   XP_038512605
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01110,787,066 - 110,808,185 (+)NCBI
RefSeq Acc Id: XM_038656679   ⟹   XP_038512607
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01110,790,060 - 110,808,185 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000006769   ⟸   ENSCAFT00000007307
RefSeq Acc Id: XP_038323802   ⟸   XM_038467874
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038323800   ⟸   XM_038467872
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038323801   ⟸   XM_038467873
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038323803   ⟸   XM_038467875
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038448800   ⟸   XM_038592872
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038512605   ⟸   XM_038656677
- Peptide Label: isoform X2
- UniProtKB: A0A8C0S6Q3 (UniProtKB/TrEMBL),   A0A8I3N0Z4 (UniProtKB/TrEMBL),   A0A8C0M597 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038512603   ⟸   XM_038656675
- Peptide Label: isoform X3
- UniProtKB: A0A8C0M597 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038512604   ⟸   XM_038656676
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M597 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038512607   ⟸   XM_038656679
- Peptide Label: isoform X2
- UniProtKB: A0A8C0S6Q3 (UniProtKB/TrEMBL),   A0A8I3N0Z4 (UniProtKB/TrEMBL),   A0A8C0M597 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038283557   ⟸   XM_038427629
- Peptide Label: isoform X3
- UniProtKB: A0A8C0M597 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038384521   ⟸   XM_038528593
- Peptide Label: isoform X2
- UniProtKB: A0A8C0M597 (UniProtKB/TrEMBL),   A0A8C0S6Q3 (UniProtKB/TrEMBL),   A0A8I3N0Z4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038384519   ⟸   XM_038528591
- Peptide Label: isoform X3
- UniProtKB: A0A8C0M597 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038384520   ⟸   XM_038528592
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M597 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038384522   ⟸   XM_038528594
- Peptide Label: isoform X2
- UniProtKB: A0A8C0M597 (UniProtKB/TrEMBL),   A0A8C0S6Q3 (UniProtKB/TrEMBL),   A0A8I3N0Z4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845007955   ⟸   ENSCAFT00845010209


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004534 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030002587 UniProtKB/TrEMBL
  ENSCAFG00040010406 UniProtKB/TrEMBL
  ENSCAFG00845005764 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000007307.5 UniProtKB/TrEMBL
  ENSCAFT00030004778.1 UniProtKB/TrEMBL
  ENSCAFT00040019288.1 UniProtKB/TrEMBL
  ENSCAFT00845010209 ENTREZGENE
  ENSCAFT00845010209.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.357.70 UniProtKB/TrEMBL
InterPro EXOC3/Sec6 UniProtKB/TrEMBL
  EXOC3/Sec6_C UniProtKB/TrEMBL
NCBI Gene EXOC3L2 ENTREZGENE
PANTHER EXOCYST COMPLEX COMPONENT 3-LIKE 2 UniProtKB/TrEMBL
  PTHR21292 UniProtKB/TrEMBL
Pfam Sec6 UniProtKB/TrEMBL
UniProt A0A8C0M597 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S6Q3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N0Z4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:54842 ENTREZGENE