Trappc9 (trafficking protein particle complex subunit 9) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Trappc9 (trafficking protein particle complex subunit 9) Heterocephalus glaber
Analyze
Symbol: Trappc9
Name: trafficking protein particle complex subunit 9 (Ensembl:trafficking protein particle complex 9)
RGD ID: 18915618
Description: INVOLVED IN cerebral cortex development (ortholog); neuron differentiation (ortholog); positive regulation of NF-kappaB transcription factor activity (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive intellectual developmental disorder 13 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: trafficking protein particle complex 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473515,897,425 - 16,661,208 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473515,898,189 - 16,661,799 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Trappc9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473515,897,425 - 16,661,208 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473515,898,189 - 16,661,799 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TRAPPC9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388139,727,725 - 140,458,579 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8139,727,725 - 140,458,579 (-)EnsemblGRCh38hg38GRCh38
GRCh378140,739,968 - 141,468,678 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368140,811,770 - 141,537,860 (-)NCBINCBI36Build 36hg18NCBI36
Celera8136,910,795 - 137,637,626 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8136,053,781 - 136,779,850 (-)NCBIHuRef
CHM1_18140,782,787 - 141,509,239 (-)NCBICHM1_1
T2T-CHM13v2.08140,847,842 - 141,578,742 (-)NCBIT2T-CHM13v2.0
Trappc9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391572,461,469 - 72,933,086 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1572,461,469 - 72,933,053 (-)EnsemblGRCm39 Ensembl
GRCm381572,589,620 - 73,061,238 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1572,589,620 - 73,061,204 (-)EnsemblGRCm38mm10GRCm38
MGSCv371572,420,050 - 72,891,634 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361573,046,993 - 73,518,251 (-)NCBIMGSCv36mm8
MGSCv361572,416,876 - 72,888,460 (-)NCBIMGSCv36mm8
Celera1574,088,714 - 74,562,121 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1533.7NCBI
Trappc9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87106,410,339 - 106,887,364 (-)NCBIGRCr8
mRatBN7.27104,521,593 - 104,998,352 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7104,521,593 - 104,998,352 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7106,265,280 - 106,740,483 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07108,486,858 - 108,962,072 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07108,434,908 - 108,910,101 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07113,986,363 - 114,309,090 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7113,681,793 - 114,305,896 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07113,923,437 - 114,090,503 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.07114,185,706 - 114,244,503 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.07113,614,134 - 113,676,676 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47110,316,543 - 110,796,685 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17110,498,700 - 110,830,468 (-)NCBI
Celera7100,935,899 - 101,408,042 (-)NCBICelera
Cytogenetic Map7q34NCBI
Trappc9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546113,498,671 - 14,124,227 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546113,498,088 - 14,130,159 (-)NCBIChiLan1.0ChiLan1.0
TRAPPC9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27157,126,438 - 157,851,839 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18132,654,644 - 133,379,503 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08136,402,736 - 137,180,507 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18139,495,813 - 140,267,032 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8139,644,041 - 140,214,782 (-)Ensemblpanpan1.1panPan2
TRAPPC9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11334,579,134 - 35,115,508 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1334,579,126 - 35,115,494 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1334,496,817 - 34,982,923 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01334,961,156 - 35,508,264 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1334,961,165 - 35,508,357 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11334,684,318 - 35,228,787 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01334,773,879 - 35,318,617 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01335,193,579 - 35,738,283 (-)NCBIUU_Cfam_GSD_1.0
Trappc9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053033,318,751 - 3,816,953 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647010,750,994 - 11,242,523 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647010,747,343 - 11,243,052 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAPPC9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl43,065,234 - 3,533,669 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.143,065,254 - 3,533,670 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.242,565,763 - 3,021,011 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRAPPC9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18133,992,020 - 134,698,218 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8134,471,193 - 134,691,231 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660395,451,103 - 5,681,407 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004837901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004837902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021251553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021251557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021251560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021251566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01011026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01011059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000012417   ⟹   ENSHGLP00000012283
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473515,897,425 - 16,178,802 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000012418   ⟹   ENSHGLP00000012284
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473515,901,435 - 16,178,802 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000012419   ⟹   ENSHGLP00000012285
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473515,904,587 - 16,661,208 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000012420   ⟹   ENSHGLP00000012286
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473515,907,040 - 16,661,208 (+)Ensembl
RefSeq Acc Id: XM_004837901   ⟹   XP_004837958
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473515,898,189 - 16,661,208 (+)NCBI
RefSeq Acc Id: XM_004837902   ⟹   XP_004837959
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473515,898,189 - 16,661,208 (+)NCBI
RefSeq Acc Id: XM_021251553   ⟹   XP_021107212
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473515,904,587 - 16,661,799 (+)NCBI
RefSeq Acc Id: XM_021251557   ⟹   XP_021107216
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473515,899,043 - 16,661,208 (+)NCBI
RefSeq Acc Id: XM_021251560   ⟹   XP_021107219
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473515,898,264 - 16,661,799 (+)NCBI
RefSeq Acc Id: XM_021251566   ⟹   XP_021107225
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473515,904,587 - 16,459,856 (+)NCBI
RefSeq Acc Id: XP_004837958   ⟸   XM_004837901
- Peptide Label: isoform X1
- UniProtKB: A0AAX6SGR2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004837959   ⟸   XM_004837902
- Peptide Label: isoform X1
- UniProtKB: A0AAX6SGR2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107219   ⟸   XM_021251560
- Peptide Label: isoform X2
- UniProtKB: A0AAX6SFB6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107216   ⟸   XM_021251557
- Peptide Label: isoform X1
- UniProtKB: A0AAX6SGR2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107212   ⟸   XM_021251553
- Peptide Label: isoform X1
- UniProtKB: A0AAX6SGR2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107225   ⟸   XM_021251566
- Peptide Label: isoform X3
- UniProtKB: A0AAX6SFP3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000012286   ⟸   ENSHGLT00000012420
Ensembl Acc Id: ENSHGLP00000012283   ⟸   ENSHGLT00000012417
Ensembl Acc Id: ENSHGLP00000012285   ⟸   ENSHGLT00000012419
Ensembl Acc Id: ENSHGLP00000012284   ⟸   ENSHGLT00000012418


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008781 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012418 ENTREZGENE
  ENSHGLT00000012419 ENTREZGENE
  ENSHGLT00000012420 ENTREZGENE
NCBI Gene Trappc9 ENTREZGENE
UniProt A0AAX6SFB6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SFP3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SGR2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-16 Trappc9  trafficking protein particle complex subunit 9  Trappc9  trafficking protein particle complex 9  Symbol and/or name change 5135510 APPROVED