Vstm2a (V-set and transmembrane domain containing 2A) - Rat Genome Database

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Gene: Vstm2a (V-set and transmembrane domain containing 2A) Heterocephalus glaber
Analyze
Symbol: Vstm2a
Name: V-set and transmembrane domain containing 2A
RGD ID: 18914265
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cellular response to BMP stimulus (ortholog); positive regulation of brown fat cell differentiation (ortholog); positive regulation of gene expression (ortholog); ASSOCIATED WITH autistic disorder (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN extracellular region (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-set and transmembrane domain-containing protein 2A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624740999,851 - 1,023,674 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624740997,516 - 1,023,489 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Vstm2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624740999,851 - 1,023,674 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624740997,516 - 1,023,489 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
VSTM2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38754,542,375 - 54,571,067 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl754,542,325 - 54,571,080 (+)EnsemblGRCh38hg38GRCh38
GRCh37754,610,068 - 54,638,760 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36754,577,513 - 54,604,442 (+)NCBINCBI36Build 36hg18NCBI36
Celera754,714,731 - 54,741,659 (+)NCBICelera
Cytogenetic Map7p11.2NCBI
HuRef754,447,719 - 54,473,944 (+)NCBIHuRef
CHM1_1754,612,543 - 54,639,436 (+)NCBICHM1_1
T2T-CHM13v2.0754,702,348 - 54,731,660 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2754,615,835 - 54,642,765 (+)NCBI
Vstm2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391116,207,742 - 16,234,551 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1116,207,724 - 16,377,310 (+)EnsemblGRCm39 Ensembl
GRCm381116,257,742 - 16,284,551 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1116,257,724 - 16,427,310 (+)EnsemblGRCm38mm10GRCm38
MGSCv371116,157,727 - 16,184,554 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361116,157,775 - 16,184,189 (+)NCBIMGSCv36mm8
Celera1116,651,091 - 16,678,297 (+)NCBICelera
Cytogenetic Map11A2NCBI
cM Map118.89NCBI
Vstm2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81494,873,259 - 95,117,189 (+)NCBIGRCr8
mRatBN7.21490,660,012 - 90,897,561 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1490,660,004 - 90,685,656 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01499,528,996 - 99,558,304 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1499,529,284 - 99,554,479 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01499,292,180 - 99,317,627 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41497,074,759 - 97,100,169 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1489,755,785 - 89,785,082 (+)NCBICelera
Cytogenetic Map14q22NCBI
Vstm2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955456767,303 - 794,635 (-)NCBIChiLan1.0ChiLan1.0
VSTM2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2659,375,603 - 59,404,466 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17107,700,323 - 107,729,191 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0755,136,669 - 55,168,379 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1755,447,878 - 55,477,148 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl755,447,878 - 55,477,148 (+)Ensemblpanpan1.1panPan2
VSTM2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1185,344,966 - 5,373,486 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl185,345,261 - 5,371,332 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha185,199,044 - 5,395,038 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0185,401,270 - 5,591,014 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl185,400,982 - 5,495,682 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1185,392,587 - 5,582,022 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0185,366,130 - 5,556,107 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0185,469,372 - 5,660,933 (+)NCBIUU_Cfam_GSD_1.0
Vstm2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118108,918,690 - 108,997,859 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936678945,791 - 971,219 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936678932,663 - 970,905 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VSTM2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9138,990,480 - 138,997,131 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19138,990,480 - 139,017,965 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29153,209,795 - 153,236,793 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VSTM2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1214,300,584 - 4,330,607 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl214,298,700 - 4,330,543 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606218,165,655 - 18,195,538 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000015721   ⟹   ENSHGLP00000015557
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624740999,851 - 1,023,674 (-)Ensembl
RefSeq Acc Id: XM_004839843   ⟹   XP_004839900
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624740997,516 - 1,023,489 (-)NCBI
RefSeq Acc Id: XM_004839844   ⟹   XP_004839901
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624740997,516 - 1,023,489 (-)NCBI
RefSeq Acc Id: XM_021254215   ⟹   XP_021109874
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247401,000,022 - 1,023,489 (-)NCBI
RefSeq Acc Id: XM_021254216   ⟹   XP_021109875
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247401,014,234 - 1,023,489 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004839900 (Get FASTA)   NCBI Sequence Viewer  
  XP_004839901 (Get FASTA)   NCBI Sequence Viewer  
  XP_021109874 (Get FASTA)   NCBI Sequence Viewer  
  XP_021109875 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB16309 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015557
RefSeq Acc Id: XP_004839900   ⟸   XM_004839843
- Peptide Label: isoform X1
- UniProtKB: A0AAX6NYM8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004839901   ⟸   XM_004839844
- Peptide Label: isoform X2
- UniProtKB: A0AAX6NYP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109874   ⟸   XM_021254215
- Peptide Label: isoform X3
- UniProtKB: A0AAX6SMN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109875   ⟸   XM_021254216
- Peptide Label: isoform X4
- UniProtKB: A0AAX6SKZ7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000015557   ⟸   ENSHGLT00000015721


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011136 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015721 ENTREZGENE
Gene3D-CATH Immunoglobulins UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  IgSF_V-set/TM_domain UniProtKB/TrEMBL
NCBI Gene Vstm2a ENTREZGENE
PANTHER V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 2A UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP Immunoglobulin UniProtKB/TrEMBL
UniProt A0AAX6NYM8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6NYP4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SKZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SMN1 ENTREZGENE, UniProtKB/TrEMBL