VSTM2A (V-set and transmembrane domain containing 2A) - Rat Genome Database

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Gene: VSTM2A (V-set and transmembrane domain containing 2A) Sus scrofa
Analyze
Symbol: VSTM2A
Name: V-set and transmembrane domain containing 2A
RGD ID: 14074554
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cellular response to BMP stimulus (ortholog); positive regulation of brown fat cell differentiation (ortholog); positive regulation of gene expression (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN extracellular region (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-set and transmembrane domain-containing protein 2A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9138,990,480 - 138,997,131 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19138,990,480 - 139,017,965 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29153,209,795 - 153,236,793 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
VSTM2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9138,990,480 - 138,997,131 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19138,990,480 - 139,017,965 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29153,209,795 - 153,236,793 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VSTM2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38754,542,375 - 54,571,067 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl754,542,325 - 54,571,080 (+)EnsemblGRCh38hg38GRCh38
GRCh37754,610,068 - 54,638,760 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36754,577,513 - 54,604,442 (+)NCBINCBI36Build 36hg18NCBI36
Celera754,714,731 - 54,741,659 (+)NCBICelera
Cytogenetic Map7p11.2NCBI
HuRef754,447,719 - 54,473,944 (+)NCBIHuRef
CHM1_1754,612,543 - 54,639,436 (+)NCBICHM1_1
T2T-CHM13v2.0754,702,348 - 54,731,660 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2754,615,835 - 54,642,765 (+)NCBI
Vstm2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391116,207,742 - 16,234,551 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1116,207,724 - 16,377,310 (+)EnsemblGRCm39 Ensembl
GRCm381116,257,742 - 16,284,551 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1116,257,724 - 16,427,310 (+)EnsemblGRCm38mm10GRCm38
MGSCv371116,157,727 - 16,184,554 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361116,157,775 - 16,184,189 (+)NCBIMGSCv36mm8
Celera1116,651,091 - 16,678,297 (+)NCBICelera
Cytogenetic Map11A2NCBI
cM Map118.89NCBI
Vstm2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81494,873,259 - 95,117,189 (+)NCBIGRCr8
mRatBN7.21490,660,012 - 90,897,561 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1490,660,004 - 90,685,656 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01499,528,996 - 99,558,304 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1499,529,284 - 99,554,479 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01499,292,180 - 99,317,627 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41497,074,759 - 97,100,169 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1489,755,785 - 89,785,082 (+)NCBICelera
Cytogenetic Map14q22NCBI
Vstm2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955456767,303 - 794,635 (-)NCBIChiLan1.0ChiLan1.0
VSTM2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2659,375,603 - 59,404,466 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17107,700,323 - 107,729,191 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0755,136,669 - 55,168,379 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1755,447,878 - 55,477,148 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl755,447,878 - 55,477,148 (+)Ensemblpanpan1.1panPan2
VSTM2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1185,344,966 - 5,373,486 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl185,345,261 - 5,371,332 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha185,199,044 - 5,395,038 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0185,401,270 - 5,591,014 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl185,400,982 - 5,495,682 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1185,392,587 - 5,582,022 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0185,366,130 - 5,556,107 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0185,469,372 - 5,660,933 (+)NCBIUU_Cfam_GSD_1.0
Vstm2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118108,918,690 - 108,997,859 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936678945,791 - 971,219 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936678932,663 - 970,905 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VSTM2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1214,300,584 - 4,330,607 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl214,298,700 - 4,330,543 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606218,165,655 - 18,195,538 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vstm2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624740999,851 - 1,023,674 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624740997,516 - 1,023,489 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in VSTM2A
592 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system nervous system
High
Medium 19
Low 3 4
Below cutoff 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000017032   ⟹   ENSSSCP00000016577
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9138,990,480 - 138,997,131 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000027722   ⟹   ENSSSCP00000026984
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9138,993,035 - 139,016,238 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000069231   ⟹   ENSSSCP00000073396
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9138,990,756 - 139,019,107 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000082561   ⟹   ENSSSCP00000065540
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9138,990,480 - 138,999,118 (+)Ensembl
RefSeq Acc Id: XM_003130442   ⟹   XP_003130490
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19138,990,480 - 139,017,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005667903   ⟹   XP_005667960
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19138,990,628 - 138,999,273 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005667904   ⟹   XP_005667961
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19138,990,633 - 139,017,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005667905   ⟹   XP_005667962
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19138,990,629 - 139,014,194 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005667907   ⟹   XP_005667964
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19138,990,629 - 138,998,886 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005667908   ⟹   XP_005667965
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19138,990,629 - 139,014,159 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013980012   ⟹   XP_013835466
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19138,990,626 - 138,998,746 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003130490   ⟸   XM_003130442
- Peptide Label: isoform X4
- UniProtKB: A0A8D0IWP1 (UniProtKB/TrEMBL),   A0A4X1T902 (UniProtKB/TrEMBL),   F1SF08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013835466   ⟸   XM_013980012
- Peptide Label: isoform X1
- UniProtKB: A0A8D0YXM9 (UniProtKB/TrEMBL),   A0A4X1T902 (UniProtKB/TrEMBL),   F1SF08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005667960   ⟸   XM_005667903
- Peptide Label: isoform X2
- UniProtKB: A0A4X1T7R6 (UniProtKB/TrEMBL),   A0A4X1T902 (UniProtKB/TrEMBL),   F1SF08 (UniProtKB/TrEMBL),   A0A8D1ZRJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005667962   ⟸   XM_005667905
- Peptide Label: isoform X5
- UniProtKB: A0A8D0T670 (UniProtKB/TrEMBL),   A0A4X1T902 (UniProtKB/TrEMBL),   F1SF08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005667965   ⟸   XM_005667908
- Peptide Label: isoform X7
- UniProtKB: A0A4X1T902 (UniProtKB/TrEMBL),   F1SF08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005667964   ⟸   XM_005667907
- Peptide Label: isoform X6
- UniProtKB: A0A4X1T902 (UniProtKB/TrEMBL),   F1SF08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005667961   ⟸   XM_005667904
- Peptide Label: isoform X3
- UniProtKB: A0A480M716 (UniProtKB/TrEMBL),   A0A4X1T5Q7 (UniProtKB/TrEMBL),   A0A4X1T902 (UniProtKB/TrEMBL),   F1SF08 (UniProtKB/TrEMBL),   A0A8D1G1W3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000073396   ⟸   ENSSSCT00000069231
RefSeq Acc Id: ENSSSCP00000026984   ⟸   ENSSSCT00000027722
RefSeq Acc Id: ENSSSCP00000016577   ⟸   ENSSSCT00000017032
RefSeq Acc Id: ENSSSCP00000065540   ⟸   ENSSSCT00000082561
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015636 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00005015873 UniProtKB/TrEMBL
  ENSSSCG00015057610 UniProtKB/TrEMBL
  ENSSSCG00025065351 UniProtKB/TrEMBL
  ENSSSCG00030050708 UniProtKB/TrEMBL
  ENSSSCG00035015436 UniProtKB/TrEMBL
  ENSSSCG00040072837 UniProtKB/TrEMBL
  ENSSSCG00045015597 UniProtKB/TrEMBL
  ENSSSCG00050050920 UniProtKB/TrEMBL
  ENSSSCG00055007696 UniProtKB/TrEMBL
  ENSSSCG00060001268 UniProtKB/TrEMBL
  ENSSSCG00065065629 UniProtKB/TrEMBL
  ENSSSCG00070007084 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017032.4 UniProtKB/TrEMBL
  ENSSSCT00005024913.1 UniProtKB/TrEMBL
  ENSSSCT00005024973.1 UniProtKB/TrEMBL
  ENSSSCT00005024999.1 UniProtKB/TrEMBL
  ENSSSCT00015076772.1 UniProtKB/TrEMBL
  ENSSSCT00025089681.1 UniProtKB/TrEMBL
  ENSSSCT00025089826.1 UniProtKB/TrEMBL
  ENSSSCT00025089907.1 UniProtKB/TrEMBL
  ENSSSCT00030070675.1 UniProtKB/TrEMBL
  ENSSSCT00030070699.1 UniProtKB/TrEMBL
  ENSSSCT00035019661.1 UniProtKB/TrEMBL
  ENSSSCT00035019665.1 UniProtKB/TrEMBL
  ENSSSCT00035019669.1 UniProtKB/TrEMBL
  ENSSSCT00040100381.1 UniProtKB/TrEMBL
  ENSSSCT00040100434.1 UniProtKB/TrEMBL
  ENSSSCT00045026417.1 UniProtKB/TrEMBL
  ENSSSCT00045026490.1 UniProtKB/TrEMBL
  ENSSSCT00045026528.1 UniProtKB/TrEMBL
  ENSSSCT00050069320.1 UniProtKB/TrEMBL
  ENSSSCT00050069325.1 UniProtKB/TrEMBL
  ENSSSCT00055015040.1 UniProtKB/TrEMBL
  ENSSSCT00055015118.1 UniProtKB/TrEMBL
  ENSSSCT00055015156.1 UniProtKB/TrEMBL
  ENSSSCT00060001543.1 UniProtKB/TrEMBL
  ENSSSCT00060001546.1 UniProtKB/TrEMBL
  ENSSSCT00065090080.1 UniProtKB/TrEMBL
  ENSSSCT00065090089.1 UniProtKB/TrEMBL
  ENSSSCT00070013614.1 UniProtKB/TrEMBL
  ENSSSCT00070013621.1 UniProtKB/TrEMBL
  ENSSSCT00070013692.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
KEGG Report ssc:100517233 UniProtKB/TrEMBL
NCBI Gene VSTM2A ENTREZGENE
PANTHER V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 2A UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A480M716 ENTREZGENE
  A0A4X1T5Q7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T7R6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T902 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IWP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0T670 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YXM9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1G1W3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ZRJ9 ENTREZGENE, UniProtKB/TrEMBL
  F1SF08 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A480M716 UniProtKB/TrEMBL
VGNC ID VGNC:94872 ENTREZGENE