Garin5a (golgi associated RAB2 interactor 5A) - Rat Genome Database

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Gene: Garin5a (golgi associated RAB2 interactor 5A) Heterocephalus glaber
Analyze
Symbol: Garin5a
Name: golgi associated RAB2 interactor 5A
RGD ID: 18913691
Description: INVOLVED IN defense response to virus (ortholog); innate immune response (ortholog); positive regulation of type I interferon production (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorder with Dysmorphic Facies and Variable Seizures (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fam71e1; family with sequence similarity 71 member E1; protein FAM71E1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248324,084,962 - 4,088,932 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Garin5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248324,084,962 - 4,088,932 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GARIN5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381950,466,788 - 50,476,848 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1950,466,785 - 50,476,848 (-)EnsemblGRCh38hg38GRCh38
GRCh371950,970,045 - 50,980,105 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,661,857 - 55,671,815 (-)NCBINCBI36Build 36hg18NCBI36
Celera1948,020,207 - 48,030,144 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1947,307,845 - 47,317,851 (-)NCBIHuRef
CHM1_11950,971,789 - 50,981,746 (-)NCBICHM1_1
T2T-CHM13v2.01953,554,302 - 53,564,334 (-)NCBIT2T-CHM13v2.0
Garin5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,145,923 - 44,153,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,146,005 - 44,150,910 (+)EnsemblGRCm39 Ensembl
GRCm38744,496,499 - 44,504,266 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,496,581 - 44,501,486 (+)EnsemblGRCm38mm10GRCm38
MGSCv37751,751,958 - 51,756,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,364,630 - 44,369,528 (+)NCBIMGSCv36mm8
Celera739,946,509 - 39,951,055 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.83NCBI
Garin5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,125,477 - 104,130,543 (+)NCBIGRCr8
mRatBN7.2194,988,959 - 94,995,971 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl194,988,613 - 94,993,539 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,374,382 - 100,378,935 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01108,847,030 - 108,851,583 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,137,455 - 102,142,008 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01100,501,556 - 100,507,334 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,501,676 - 100,506,022 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01101,566,949 - 101,572,014 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4194,974,280 - 94,978,738 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,052,353 - 95,056,848 (+)NCBI
Celera189,251,524 - 89,257,302 (+)NCBICelera
Cytogenetic Map1q22NCBI
Garin5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955559676,597 - 683,690 (+)NCBIChiLan1.0ChiLan1.0
GARIN5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22056,533,511 - 56,542,881 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11958,454,266 - 58,463,744 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01947,430,860 - 47,440,894 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11956,331,851 - 56,342,033 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1956,331,851 - 56,342,033 (-)Ensemblpanpan1.1panPan2
GARIN5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,261,215 - 106,266,317 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1106,261,183 - 106,266,315 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1105,834,296 - 105,839,419 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01106,772,262 - 106,777,385 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1106,772,463 - 106,777,383 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11106,444,457 - 106,449,580 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,085,930 - 106,091,053 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01106,926,589 - 106,931,714 (+)NCBIUU_Cfam_GSD_1.0
Garin5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,407,446 - 22,412,802 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936889283,545 - 288,576 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936889283,435 - 288,795 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GARIN5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,310,729 - 55,316,370 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1655,310,616 - 55,316,269 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2651,159,521 - 51,165,348 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GARIN5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1643,531,388 - 43,537,532 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607323,519,569 - 23,525,970 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004866819   ⟹   XP_004866876
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248324,084,962 - 4,088,932 (+)NCBI
RefSeq Acc Id: XM_004866820   ⟹   XP_004866877
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248324,084,962 - 4,088,932 (+)NCBI
RefSeq Acc Id: XM_004866821   ⟹   XP_004866878
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248324,084,962 - 4,088,932 (+)NCBI
RefSeq Acc Id: XM_021245799   ⟹   XP_021101458
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248324,084,962 - 4,088,932 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004866876 (Get FASTA)   NCBI Sequence Viewer  
  XP_004866877 (Get FASTA)   NCBI Sequence Viewer  
  XP_004866878 (Get FASTA)   NCBI Sequence Viewer  
  XP_021101458 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007276
Reference Protein Sequences
RefSeq Acc Id: XP_004866876   ⟸   XM_004866819
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004866877   ⟸   XM_004866820
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004866878   ⟸   XM_004866821
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021101458   ⟸   XM_021245799
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005298 ENTREZGENE
Ensembl Transcript ENSHGLT00000007361 ENTREZGENE
NCBI Gene Fam71e1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-11-30 Garin5a  golgi associated RAB2 interactor 5A  Fam71e1  family with sequence similarity 71 member E1  Symbol and/or name change 5135510 APPROVED