Symbol:
Irx4
Name:
iroquois homeobox 4
RGD ID:
18913151
Description:
ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN establishment of animal organ orientation (ortholog); heart development (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); autosomal dominant dyskeratosis congenita 2 (ortholog); Cardiomegaly (ortholog); FOUND IN nucleus (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
iroquois-class homeodomain protein IRX-4
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Irx4
IRX4 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 5 1,877,413 - 1,887,179 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 5 1,877,413 - 1,887,236 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 5 1,877,527 - 1,887,293 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 5 1,930,549 - 1,935,880 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 5 1,930,548 - 1,935,880 NCBI Celera 5 1,914,716 - 1,920,055 (-) NCBI Celera Cytogenetic Map 5 p15.33 NCBI HuRef 5 1,859,971 - 1,869,709 (-) NCBI HuRef CHM1_1 5 1,877,411 - 1,887,153 (-) NCBI CHM1_1 T2T-CHM13v2.0 5 1,794,071 - 1,803,829 (-) NCBI T2T-CHM13v2.0
Irx4 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 13 73,407,708 - 73,417,741 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 13 73,408,598 - 73,417,727 (+) Ensembl GRCm39 Ensembl GRCm38 13 73,259,589 - 73,269,622 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 13 73,260,479 - 73,269,608 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 13 73,397,945 - 73,407,068 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 13 73,726,801 - 73,735,598 (+) NCBI MGSCv36 mm8 Celera 13 75,588,186 - 75,597,409 (+) NCBI Celera Cytogenetic Map 13 C1 NCBI cM Map 13 39.64 NCBI
Irx4 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 1 31,859,101 - 31,868,089 (-) NCBI GRCr8 mRatBN7.2 1 30,030,561 - 30,039,549 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 1 30,030,561 - 30,039,549 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 1 29,832,663 - 29,841,651 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 1 35,831,585 - 35,840,573 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 1 30,031,431 - 30,040,421 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 1 32,634,774 - 32,645,151 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 32,634,796 - 32,643,771 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 1 34,059,592 - 34,069,967 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 17 106,225 - 116,183 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 17 106,237 - 115,891 (-) NCBI Celera 1 28,670,547 - 28,679,535 (-) NCBI Celera Cytogenetic Map 1 p11 NCBI
Irx4 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955504 937,621 - 940,787 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955504 937,152 - 940,842 (-) NCBI ChiLan1.0 ChiLan1.0
IRX4 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 4 2,149,654 - 2,159,181 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 5 303,263 - 312,790 (-) NCBI NHGRI_mPanPan1 PanPan1.1 Ensembl 5 1,929,977 - 1,939,622 (-) Ensembl panpan1.1 panPan2
IRX4 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 34 10,926,042 - 10,929,142 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 34 10,923,097 - 10,929,164 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 34 15,436,562 - 15,441,344 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 34 10,827,001 - 10,831,785 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 34 10,825,113 - 10,831,773 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 34 10,878,209 - 10,882,991 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 34 10,857,416 - 10,862,195 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 34 11,068,071 - 11,072,857 (+) NCBI UU_Cfam_GSD_1.0
Irx4
IRX4 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 16 78,937,566 - 78,945,269 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 16 78,940,033 - 78,944,855 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 16 85,558,917 - 85,563,495 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
IRX4 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 4 1,712,382 - 1,723,284 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 4 1,718,737 - 1,723,403 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666064 27,033,339 - 27,043,099 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSHGLT00000010494 ⟹ ENSHGLP00000010379
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla_female_1.0 Ensembl NW_004624751 913,691 - 916,842 (-) Ensembl
RefSeq Acc Id:
XM_013072345 ⟹ XP_012927799
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624751 913,127 - 916,583 (-) NCBI
RefSeq Acc Id:
XP_012927799 ⟸ XM_013072345
- UniProtKB:
G5BPI6 (UniProtKB/TrEMBL), A0AAX6QU05 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSHGLP00000010379 ⟸ ENSHGLT00000010494
