Arrdc4 (arrestin domain containing 4) - Rat Genome Database

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Gene: Arrdc4 (arrestin domain containing 4) Heterocephalus glaber
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Symbol: Arrdc4
Name: arrestin domain containing 4
RGD ID: 18912324
Description: ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN extracellular vesicle biogenesis (ortholog); positive regulation of interferon-beta production (ortholog); positive regulation of ubiquitin-protein transferase activity (ortholog); FOUND IN endosome (ortholog); extracellular vesicle (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Arrestin domain-containing protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247686,248,082 - 6,260,600 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Arrdc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247686,248,082 - 6,260,600 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ARRDC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381597,960,703 - 97,973,833 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1597,960,703 - 97,973,833 (+)EnsemblGRCh38hg38GRCh38
GRCh371598,503,933 - 98,517,063 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361596,304,947 - 96,318,064 (+)NCBINCBI36Build 36hg18NCBI36
Build 341596,304,951 - 96,318,064NCBI
Celera1574,920,256 - 74,933,391 (+)NCBICelera
Cytogenetic Map15q26.2NCBI
HuRef1574,633,884 - 74,647,021 (+)NCBIHuRef
CHM1_11598,345,926 - 98,359,059 (+)NCBICHM1_1
T2T-CHM13v2.01595,726,358 - 95,739,492 (+)NCBIT2T-CHM13v2.0
Arrdc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39768,386,742 - 68,398,986 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl768,386,743 - 68,398,989 (-)EnsemblGRCm39 Ensembl
GRCm38768,736,994 - 68,749,238 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl768,736,995 - 68,749,241 (-)EnsemblGRCm38mm10GRCm38
MGSCv37775,881,880 - 75,894,124 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36768,615,124 - 68,622,716 (-)NCBIMGSCv36mm8
Celera766,193,576 - 66,206,534 (-)NCBICelera
Cytogenetic Map7CNCBI
cM Map737.81NCBI
Arrdc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81131,779,436 - 131,793,438 (-)NCBIGRCr8
mRatBN7.21122,369,355 - 122,383,351 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1122,369,360 - 122,383,290 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1130,366,117 - 130,380,105 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01137,536,216 - 137,550,204 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01130,337,167 - 130,351,155 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01129,766,097 - 129,780,076 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1129,766,100 - 129,780,356 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01130,819,069 - 130,833,129 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41123,522,706 - 123,531,698 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11123,602,320 - 123,613,916 (-)NCBI
Celera1114,557,876 - 114,566,923 (-)NCBICelera
Cytogenetic Map1q22NCBI
Arrdc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541625,573,265 - 25,587,127 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541625,573,265 - 25,583,928 (+)NCBIChiLan1.0ChiLan1.0
ARRDC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21687,505,885 - 87,519,147 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11591,202,496 - 91,215,647 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01576,643,796 - 76,657,525 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11595,830,793 - 95,843,939 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1595,830,793 - 95,843,939 (+)Ensemblpanpan1.1panPan2
ARRDC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1342,650,257 - 42,663,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl342,652,728 - 42,664,401 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha345,351,735 - 45,364,995 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0343,060,856 - 43,074,118 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl343,060,868 - 43,074,103 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1342,584,579 - 42,597,841 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0342,816,780 - 42,830,047 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0343,037,496 - 43,050,757 (-)NCBIUU_Cfam_GSD_1.0
Arrdc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640140,932,378 - 140,945,035 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364835,389,422 - 5,402,076 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364835,389,448 - 5,401,995 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARRDC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl781,656,755 - 81,669,536 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1781,656,760 - 81,669,584 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2787,586,099 - 87,598,949 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARRDC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12916,536,541 - 16,551,386 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2916,538,408 - 16,548,743 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605930,040,508 - 30,053,676 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004852706   ⟹   XP_004852763
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247686,248,082 - 6,260,600 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004852763 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB00254 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000021223
RefSeq Acc Id: XP_004852763   ⟸   XM_004852706


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015163 ENTREZGENE
Ensembl Transcript ENSHGLT00000021427 ENTREZGENE
NCBI Gene Arrdc4 ENTREZGENE