Ift46 (intraflagellar transport 46) - Rat Genome Database

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Gene: Ift46 (intraflagellar transport 46) Heterocephalus glaber
Analyze
Symbol: Ift46
Name: intraflagellar transport 46
RGD ID: 18912252
Description: INVOLVED IN cilium assembly (ortholog); smoothened signaling pathway (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); FOUND IN intraciliary transport particle B (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: intraflagellar transport 46 homolog; intraflagellar transport protein 46 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478413,939,533 - 13,950,545 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478413,938,917 - 13,954,729 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ift46
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478413,939,533 - 13,950,545 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478413,938,917 - 13,954,729 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
IFT46
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811118,544,543 - 118,576,898 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11118,544,528 - 118,572,970 (-)EnsemblGRCh38hg38GRCh38
GRCh3711118,415,258 - 118,436,646 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611117,920,468 - 117,941,960 (-)NCBINCBI36Build 36hg18NCBI36
Celera11115,576,037 - 115,597,575 (-)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11114,351,924 - 114,374,391 (-)NCBIHuRef
CHM1_111118,301,899 - 118,323,450 (-)NCBICHM1_1
T2T-CHM13v2.011118,563,838 - 118,596,187 (-)NCBIT2T-CHM13v2.0
Ift46
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,683,074 - 44,704,011 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,679,205 - 44,704,744 (+)EnsemblGRCm39 Ensembl
GRCm38944,770,456 - 44,792,714 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,767,908 - 44,793,447 (+)EnsemblGRCm38mm10GRCm38
MGSCv37944,581,092 - 44,600,797 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,524,004 - 44,543,709 (+)NCBIMGSCv36mm8
Celera942,038,092 - 42,057,642 (+)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
Ift46
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,975,085 - 54,000,837 (+)NCBIGRCr8
mRatBN7.2845,081,593 - 45,104,052 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl845,087,440 - 45,104,052 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,582,610 - 50,599,215 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,861,327 - 48,877,932 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,731,947 - 46,748,551 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0849,075,978 - 49,097,689 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl849,077,053 - 49,097,686 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,695,039 - 47,716,197 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,729,931 - 47,746,456 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,738,696 - 47,755,221 (+)NCBI
Celera844,672,352 - 44,689,060 (+)NCBICelera
Cytogenetic Map8q22NCBI
Ift46
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541219,697,995 - 19,711,665 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541219,697,995 - 19,710,965 (-)NCBIChiLan1.0ChiLan1.0
IFT46
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29119,248,728 - 119,271,428 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111120,353,727 - 120,376,418 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,382,150 - 113,404,866 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111117,312,894 - 117,335,319 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,312,894 - 117,335,319 (-)Ensemblpanpan1.1panPan2
IFT46
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1515,179,287 - 15,197,737 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl515,170,854 - 15,197,736 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha515,230,585 - 15,248,934 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0515,121,323 - 15,139,675 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl515,112,824 - 15,153,379 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1515,260,026 - 15,278,372 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0515,163,333 - 15,181,860 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0515,203,734 - 15,222,615 (+)NCBIUU_Cfam_GSD_1.0
Ift46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947100,656,174 - 100,676,473 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365423,577,580 - 3,597,859 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365423,577,387 - 3,597,954 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFT46
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl945,844,619 - 45,861,879 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1945,844,636 - 45,861,918 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2950,843,924 - 50,861,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IFT46
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11109,937,300 - 109,959,224 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1109,932,922 - 109,959,131 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604316,078,795 - 16,100,554 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000024466   ⟹   ENSHGLP00000024247
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478413,939,533 - 13,950,545 (-)Ensembl
RefSeq Acc Id: XM_004856715   ⟹   XP_004856772
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478413,938,917 - 13,954,728 (-)NCBI
RefSeq Acc Id: XM_021237694   ⟹   XP_021093353
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478413,938,917 - 13,954,729 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004856772 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093353 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000024247
Reference Protein Sequences
RefSeq Acc Id: XP_021093353   ⟸   XM_021237694
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004856772   ⟸   XM_004856715
- Peptide Label: isoform X1
- UniProtKB: G5BHM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000024247   ⟸   ENSHGLT00000024466


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017283 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000024466 ENTREZGENE
InterPro Intraflagellar_transp_cmplxB UniProtKB/TrEMBL
NCBI Gene Ift46 ENTREZGENE
PANTHER INTRAFLAGELLAR TRANSPORT PROTEIN 46 HOMOLOG UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam IFT46_B_C UniProtKB/TrEMBL
UniProt G5BHM1 ENTREZGENE, UniProtKB/TrEMBL