Nr0b1 (nuclear receptor subfamily 0 group B member 1) - Rat Genome Database

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Gene: Nr0b1 (nuclear receptor subfamily 0 group B member 1) Heterocephalus glaber
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Symbol: Nr0b1
Name: nuclear receptor subfamily 0 group B member 1
RGD ID: 18911845
Description: ENCODES a protein that exhibits AF-2 domain binding (ortholog); DNA hairpin binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN adrenal gland development (ortholog); endodermal cell differentiation (ortholog); gonad development (ortholog); ASSOCIATED WITH 46,XY sex reversal 2 (ortholog); autistic disorder (ortholog); Duchenne muscular dystrophy (ortholog); FOUND IN centriolar satellite (ortholog); intracellular membrane-bounded organelle (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476225,764,452 - 25,769,487 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476225,759,976 - 25,769,543 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nr0b1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476225,764,452 - 25,769,487 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476225,759,976 - 25,769,543 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NR0B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X30,304,206 - 30,309,390 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX30,304,206 - 30,309,390 (-)EnsemblGRCh38hg38GRCh38
GRCh37X30,322,323 - 30,327,507 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X30,232,506 - 30,237,413 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X30,082,242 - 30,087,149NCBI
CeleraX34,444,104 - 34,449,076 (-)NCBICelera
Cytogenetic MapXp21.2NCBI
HuRefX28,059,200 - 28,064,172 (-)NCBIHuRef
CHM1_1X30,353,361 - 30,358,333 (-)NCBICHM1_1
T2T-CHM13v2.0X29,896,466 - 29,901,652 (-)NCBIT2T-CHM13v2.0
Nr0b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X85,235,381 - 85,239,553 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX85,235,370 - 85,239,553 (+)EnsemblGRCm39 Ensembl
GRCm38X86,191,775 - 86,195,947 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX86,191,764 - 86,195,947 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X83,437,114 - 83,441,283 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X82,444,494 - 82,448,663 (+)NCBIMGSCv36mm8
CeleraX77,386,142 - 77,390,314 (+)NCBICelera
Cytogenetic MapXC1NCBI
cM MapX39.67NCBI
Nr0b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X54,707,658 - 54,711,786 (+)NCBIGRCr8
mRatBN7.2X50,756,886 - 50,761,014 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX50,756,886 - 50,761,011 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX52,086,588 - 52,090,716 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X55,587,000 - 55,591,128 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X53,217,986 - 53,222,114 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X54,734,385 - 54,738,513 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX54,734,385 - 54,738,513 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X54,937,819 - 54,941,947 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X73,006,294 - 73,010,422 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X73,079,585 - 73,083,711 (+)NCBI
CeleraX51,292,676 - 51,296,804 (+)NCBICelera
Cytogenetic MapXq21NCBI
Nr0b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955531567,173 - 572,331 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955531567,491 - 572,329 (+)NCBIChiLan1.0ChiLan1.0
NR0B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X32,097,705 - 32,102,856 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X32,100,823 - 32,106,018 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X22,903,403 - 22,908,527 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X30,459,527 - 30,464,652 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX30,459,527 - 30,464,652 (-)Ensemblpanpan1.1panPan2
NR0B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X25,396,527 - 25,401,587 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX25,396,527 - 25,401,715 (-)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX30,371,048 - 30,375,977 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X25,418,991 - 25,424,263 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X25,467,201 - 25,472,041 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X25,464,894 - 25,469,724 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X25,560,779 - 25,565,608 (-)NCBIUU_Cfam_GSD_1.0
Nr0b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X18,343,850 - 18,347,995 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365536,436,371 - 6,440,141 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365536,436,371 - 6,440,141 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR0B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX26,117,874 - 26,122,951 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X26,117,874 - 26,122,951 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X28,384,122 - 28,389,200 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig CytomapXp24NCBI
NR0B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X28,707,698 - 28,713,158 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX28,707,699 - 28,712,708 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605630,693,186 - 30,698,838 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000011612   ⟹   ENSHGLP00000011485
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476225,764,452 - 25,769,487 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000011613   ⟹   ENSHGLP00000011486
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476225,764,613 - 25,769,430 (+)Ensembl
RefSeq Acc Id: XM_004850061   ⟹   XP_004850118
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476225,761,917 - 25,769,543 (+)NCBI
RefSeq Acc Id: XM_021262609   ⟹   XP_021118268
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476225,759,976 - 25,769,543 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004850118 (Get FASTA)   NCBI Sequence Viewer  
  XP_021118268 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011485
  ENSHGLP00100041286
GenBank Protein JAO02643 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021118268   ⟸   XM_021262609
- UniProtKB: A0A0P6JLL0 (UniProtKB/TrEMBL),   G5BQK0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004850118   ⟸   XM_004850061
- UniProtKB: A0A0P6JLL0 (UniProtKB/TrEMBL),   G5BQK0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000011486   ⟸   ENSHGLT00000011613
Ensembl Acc Id: ENSHGLP00000011485   ⟸   ENSHGLT00000011612


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008237 Ensembl, ENTREZGENE
  ENSHGLG00100038470 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000011612 ENTREZGENE
  ENSHGLT00100048752 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/TrEMBL
  NR0B1/2 UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/TrEMBL
  Nuclear_receptor_repeat UniProtKB/TrEMBL
KEGG Report hgl:101720551 UniProtKB/TrEMBL
NCBI Gene Nr0b1 ENTREZGENE
PANTHER NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B MEMBER 1 UniProtKB/TrEMBL
  PTHR24081 UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/TrEMBL
  NR_Repeat UniProtKB/TrEMBL
PRINTS STRDHORMONER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
SMART HOLI UniProtKB/TrEMBL
Superfamily-SCOP SSF48508 UniProtKB/TrEMBL
UniProt A0A0P6JLL0 ENTREZGENE, UniProtKB/TrEMBL
  G5BQK0 ENTREZGENE, UniProtKB/TrEMBL