Acot9 (acyl-CoA thioesterase 9) - Rat Genome Database

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Gene: Acot9 (acyl-CoA thioesterase 9) Heterocephalus glaber
Analyze
Symbol: Acot9
Name: acyl-CoA thioesterase 9
RGD ID: 18911770
Description: ENCODES a protein that exhibits acetyl-CoA hydrolase activity (ortholog); long-chain fatty acyl-CoA hydrolase activity (ortholog); INVOLVED IN long-chain fatty acid metabolic process (ortholog); short-chain fatty acid metabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN mitochondrial matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acyl-coenzyme A thioesterase 9, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624897125,348 - 155,621 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624897125,348 - 155,557 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Acot9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624897125,348 - 155,621 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624897125,348 - 155,557 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ACOT9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X23,701,055 - 23,743,276 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX23,701,055 - 23,766,475 (-)EnsemblGRCh38hg38GRCh38
GRCh37X23,719,172 - 23,761,393 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X23,631,698 - 23,671,328 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX27,842,554 - 27,882,190 (-)NCBICelera
Cytogenetic MapXp22.11NCBI
HuRefX21,460,810 - 21,501,317 (-)NCBIHuRef
CHM1_1X23,752,695 - 23,792,269 (-)NCBICHM1_1
T2T-CHM13v2.0X23,284,668 - 23,326,884 (-)NCBIT2T-CHM13v2.0
Acot9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X154,045,439 - 154,080,650 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX154,045,439 - 154,080,650 (+)EnsemblGRCm39 Ensembl
GRCm38X155,262,443 - 155,297,654 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX155,262,443 - 155,297,654 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X151,697,043 - 151,732,050 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X150,603,226 - 150,638,364 (+)NCBIMGSCv36mm8
CeleraX138,566,044 - 138,601,000 (+)NCBICelera
Cytogenetic MapXF3NCBI
cM MapX72.38NCBI
Acot9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X43,922,943 - 43,973,311 (-)NCBIGRCr8
mRatBN7.2X40,073,197 - 40,123,573 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX40,064,810 - 40,123,559 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX41,332,153 - 41,371,197 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X44,799,449 - 44,838,500 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X42,484,036 - 42,523,088 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X43,543,069 - 43,592,200 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX43,543,070 - 43,592,200 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X43,846,064 - 43,895,821 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X61,548,318 - 61,600,120 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X61,601,787 - 61,653,589 (-)NCBI
CeleraX40,701,964 - 40,751,523 (-)NCBICelera
Cytogenetic MapXq21NCBI
Acot9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555094,143,586 - 4,167,128 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555094,143,246 - 4,167,129 (-)NCBIChiLan1.0ChiLan1.0
ACOT9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X25,504,426 - 25,544,539 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X25,503,513 - 25,547,923 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X16,300,116 - 16,365,713 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X23,678,071 - 23,717,092 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX23,676,669 - 23,717,092 (-)Ensemblpanpan1.1panPan2
ACOT9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X19,395,763 - 19,460,945 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX19,395,762 - 19,551,198 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X19,350,059 - 19,415,885 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX19,342,343 - 19,374,457 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X19,389,633 - 19,455,007 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X19,422,682 - 19,488,508 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X19,479,032 - 19,544,221 (-)NCBIUU_Cfam_GSD_1.0
Acot9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X12,323,397 - 12,397,793 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936624795,237 - 836,571 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936624795,272 - 834,441 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACOT9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX19,834,614 - 19,864,660 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X19,835,674 - 19,864,570 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X21,205,864 - 21,234,787 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACOT9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X22,152,651 - 22,190,536 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX22,151,384 - 22,190,505 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605624,048,616 - 24,087,263 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000006576   ⟹   ENSHGLP00000006494
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624897125,348 - 155,621 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000006577   ⟹   ENSHGLP00000006495
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624897125,669 - 155,621 (-)Ensembl
RefSeq Acc Id: XM_004872217   ⟹   XP_004872274
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624897125,348 - 155,557 (-)NCBI
RefSeq Acc Id: XM_004872218   ⟹   XP_004872275
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624897125,348 - 155,557 (-)NCBI
RefSeq Acc Id: XM_013068313   ⟹   XP_012923767
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624897125,348 - 155,557 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004872274 (Get FASTA)   NCBI Sequence Viewer  
  XP_004872275 (Get FASTA)   NCBI Sequence Viewer  
  XP_012923767 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006494
  ENSHGLP00000006495
GenBank Protein JAN98039 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_012923767   ⟸   XM_013068313
- Peptide Label: isoform X3
- UniProtKB: G5BCE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004872275   ⟸   XM_004872218
- Peptide Label: isoform X2
- UniProtKB: G5BCE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004872274   ⟸   XM_004872217
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JUE3 (UniProtKB/TrEMBL),   G5BCE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000006494   ⟸   ENSHGLT00000006576
RefSeq Acc Id: ENSHGLP00000006495   ⟸   ENSHGLT00000006577


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004750 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006576 ENTREZGENE
  ENSHGLT00000006577 ENTREZGENE
Gene3D-CATH Hotdog Thioesterase UniProtKB/TrEMBL
InterPro HOTDOG_ACOT UniProtKB/TrEMBL
  HotDog_dom_sf UniProtKB/TrEMBL
KEGG Report hgl:101725922 UniProtKB/TrEMBL
NCBI Gene Acot9 ENTREZGENE
PANTHER ACYL-COA THIOESTERASE UniProtKB/TrEMBL
  ACYL-COENZYME A THIOESTERASE 9, MITOCHONDRIAL UniProtKB/TrEMBL
PROSITE HOTDOG_ACOT UniProtKB/TrEMBL
Superfamily-SCOP SSF54637 UniProtKB/TrEMBL
UniProt A0A0P6JUE3 ENTREZGENE, UniProtKB/TrEMBL
  G5BCE6 ENTREZGENE, UniProtKB/TrEMBL