Nr2c2 (nuclear receptor subfamily 2 group C member 2) - Rat Genome Database

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Gene: Nr2c2 (nuclear receptor subfamily 2 group C member 2) Heterocephalus glaber
Analyze
Symbol: Nr2c2
Name: nuclear receptor subfamily 2 group C member 2
RGD ID: 18911274
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cerebellum development (ortholog); lipopolysaccharide-mediated signaling pathway (ortholog); meiotic cell cycle (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); endometriosis (ortholog); Isolated Noncompaction of the Ventricular Myocardium (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624872953,097 - 981,974 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624872953,428 - 1,028,738 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nr2c2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624872953,097 - 981,974 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624872953,428 - 1,028,738 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NR2C2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38314,947,583 - 15,049,273 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl314,947,583 - 15,053,600 (+)EnsemblGRCh38hg38GRCh38
GRCh37314,989,090 - 15,090,780 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36314,964,240 - 15,065,784 (+)NCBINCBI36Build 36hg18NCBI36
Build 34314,964,239 - 15,059,854NCBI
Celera314,927,498 - 15,029,051 (+)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef314,980,982 - 15,026,388 (+)NCBIHuRef
CHM1_1314,940,196 - 15,041,731 (+)NCBICHM1_1
T2T-CHM13v2.0314,950,033 - 15,051,696 (+)NCBIT2T-CHM13v2.0
Nr2c2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39692,068,426 - 92,150,039 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl692,068,371 - 92,151,275 (+)EnsemblGRCm39 Ensembl
GRCm38692,091,418 - 92,173,058 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl692,091,390 - 92,174,294 (+)EnsemblGRCm38mm10GRCm38
MGSCv37692,041,412 - 92,123,052 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36692,104,498 - 92,133,463 (+)NCBIMGSCv36mm8
Celera693,985,636 - 94,068,601 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map641.03NCBI
Nr2c2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84126,167,350 - 126,223,942 (+)NCBIGRCr8
mRatBN7.24124,610,216 - 124,666,813 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4124,608,960 - 124,661,902 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4130,104,022 - 130,134,622 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04125,878,455 - 125,909,055 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04124,502,988 - 124,533,588 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04124,005,287 - 124,030,349 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4124,005,280 - 124,030,349 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04189,231,452 - 189,256,039 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44126,319,412 - 126,344,808 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14126,564,252 - 126,589,637 (+)NCBI
Celera4113,554,791 - 113,579,853 (+)NCBICelera
Cytogenetic Map4q34NCBI
Nr2c2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542917,386,190 - 17,430,820 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542917,386,190 - 17,430,820 (+)NCBIChiLan1.0ChiLan1.0
NR2C2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2214,928,971 - 15,033,524 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1314,933,922 - 15,040,422 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0314,869,292 - 14,973,977 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1315,220,110 - 15,312,507 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl315,220,110 - 15,306,242 (+)Ensemblpanpan1.1panPan2
NR2C2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1205,041,656 - 5,139,859 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl205,052,232 - 5,133,721 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha205,078,881 - 5,176,796 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0205,063,028 - 5,160,979 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl205,062,849 - 5,155,998 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1204,781,343 - 4,879,258 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0205,132,066 - 5,229,600 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0205,115,710 - 5,213,646 (+)NCBIUU_Cfam_GSD_1.0
Nr2c2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494218,355,583 - 18,417,842 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936602504,652 - 553,936 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936602491,821 - 557,790 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR2C2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1369,464,795 - 69,576,946 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11369,464,798 - 69,577,638 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21376,826,751 - 76,919,612 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NR2C2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12250,882,569 - 50,983,851 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2250,894,802 - 50,977,581 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041115,508,016 - 115,610,568 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000011044   ⟹   ENSHGLP00000010922
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624872953,097 - 981,974 (-)Ensembl
RefSeq Acc Id: XM_004870470   ⟹   XP_004870527
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624872953,428 - 1,028,720 (-)NCBI
RefSeq Acc Id: XM_004870472   ⟹   XP_004870529
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624872953,428 - 975,176 (-)NCBI
RefSeq Acc Id: XM_004870473   ⟹   XP_004870530
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624872953,428 - 1,028,738 (-)NCBI
RefSeq Acc Id: XM_013067724   ⟹   XP_012923178
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624872953,428 - 1,027,311 (-)NCBI
RefSeq Acc Id: XM_013067725   ⟹   XP_012923179
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624872953,428 - 1,028,722 (-)NCBI
RefSeq Acc Id: XM_013067726   ⟹   XP_012923180
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624872953,428 - 1,027,423 (-)NCBI
RefSeq Acc Id: XR_002391139
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624872957,888 - 1,027,318 (-)NCBI
RefSeq Acc Id: XP_004870530   ⟸   XM_004870473
- Peptide Label: isoform X2
- UniProtKB: G5ANT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923179   ⟸   XM_013067725
- Peptide Label: isoform X2
- UniProtKB: G5ANT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004870527   ⟸   XM_004870470
- Peptide Label: isoform X2
- UniProtKB: G5ANT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923180   ⟸   XM_013067726
- Peptide Label: isoform X2
- UniProtKB: G5ANT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923178   ⟸   XM_013067724
- Peptide Label: isoform X1
- UniProtKB: G5ANT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004870529   ⟸   XM_004870472
- Peptide Label: isoform X2
- UniProtKB: G5ANT1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000010922   ⟸   ENSHGLT00000011044


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007834 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000011044 ENTREZGENE
Gene3D-CATH Erythroid Transcription Factor GATA-1, subunit A UniProtKB/TrEMBL
  Retinoid X Receptor UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/TrEMBL
  NR2C1/2-like_DBD UniProtKB/TrEMBL
  NR2C1/2-like_LBD UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/TrEMBL
  Nuclear_hormone_rcpt_NR2 UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
NCBI Gene Nr2c2 ENTREZGENE
PANTHER NUCLEAR HORMONE RECEPTOR UniProtKB/TrEMBL
  NUCLEAR RECEPTOR SUBFAMILY 2 GROUP C MEMBER 2 UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/TrEMBL
  zf-C4 UniProtKB/TrEMBL
PRINTS STRDHORMONER UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/TrEMBL
SMART HOLI UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  Nuclear receptor ligand-binding domain UniProtKB/TrEMBL
UniProt G5ANT1 ENTREZGENE, UniProtKB/TrEMBL