Nr2c2 (nuclear receptor subfamily 2, group C, member 2) - Rat Genome Database
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Gene: Nr2c2 (nuclear receptor subfamily 2, group C, member 2) Mus musculus
Analyze
Symbol: Nr2c2
Name: nuclear receptor subfamily 2, group C, member 2
RGD ID: 735810
MGI Page MGI
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and nuclear receptor activity. Involved in several processes, including p38MAPK cascade; positive regulation of myoblast differentiation; and spermatogenesis. Predicted to localize to nuclear chromatin and nucleoplasm. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; hemolymphoid system gland; and liver and biliary system. Orthologous to human NR2C2 (nuclear receptor subfamily 2 group C member 2); INTERACTS WITH 1,2-dichloroethane; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: KIAA4145; MGC124356; MGC124357; MGC124358; mKIAA4145; nuclear receptor subfamily 2 group C member 2; nuclear receptor subfamily 2, group H, member 2; orphan nuclear receptor TAK1; orphan nuclear receptor TR4; orphan receptor, TR4; TAK; TAK1; testicular receptor 4; Tr; Tr4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39692,068,399 - 92,150,039 (+)NCBIGRCm39mm39
GRCm38692,091,418 - 92,173,058 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl692,091,390 - 92,174,294 (+)EnsemblGRCm38mm10GRCm38
MGSCv37692,041,412 - 92,123,052 (+)NCBIGRCm37mm9NCBIm37
MGSCv36692,104,498 - 92,133,463 (+)NCBImm8
Celera693,985,636 - 94,068,601 (+)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)
nucleus  (IEA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal blood homeostasis  (IAGP)
abnormal eating behavior  (IAGP)
abnormal embryo turning  (IEA)
abnormal energy homeostasis  (IAGP)
abnormal eye anterior chamber depth  (IEA)
abnormal gas homeostasis  (IAGP)
abnormal glucose homeostasis  (IAGP)
abnormal hemoglobin  (IAGP)
abnormal lipid homeostasis  (IAGP)
abnormal mechanical nociception  (IAGP)
abnormal neural tube closure  (IEA)
abnormal neuron physiology  (IAGP)
abnormal pharyngeal arch morphology  (IEA)
abnormal sympathetic afferent fiber morphology  (IAGP)
abnormal touch/ nociception  (IAGP)
abnormal white adipose tissue physiology  (IAGP)
arrest of male meiosis  (IAGP)
decreased abdominal fat pad weight  (IAGP)
decreased anxiety-related response  (IAGP)
decreased body fat mass  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased brown adipose tissue mass  (IAGP)
decreased circulating alanine transaminase level  (IAGP)
decreased circulating aspartate transaminase level  (IAGP)
decreased circulating cholesterol level  (IAGP)
decreased circulating glucose level  (IAGP)
decreased circulating insulin level  (IAGP)
decreased circulating LDL cholesterol level  (IAGP)
decreased circulating triglyceride level  (IAGP)
decreased epididymal fat pad weight  (IAGP)
decreased inflammatory response  (IAGP)
decreased liver triglyceride level  (IAGP)
decreased neuron number  (IAGP)
decreased pruritus  (IAGP)
decreased susceptibility to diet-induced obesity  (IAGP)
decreased susceptibility to hepatic steatosis  (IAGP)
decreased testis weight  (IAGP)
decreased white fat cell size  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
embryonic lethality prior to tooth bud stage  (IEA)
impaired coordination  (IAGP)
impaired glucose tolerance  (IEA)
increased carbon dioxide production  (IAGP)
increased chemical nociceptive threshold  (IAGP)
increased energy expenditure  (IAGP)
increased oxygen consumption  (IAGP)
increased respiratory quotient  (IAGP)
increased thermal nociceptive threshold  (IAGP)
multinucleated giant male germ cells  (IAGP)
oligozoospermia  (IAGP)
preweaning lethality, incomplete penetrance  (IEA)
reduced male fertility  (IAGP)
seminiferous tubule degeneration  (IAGP)
References

Additional References at PubMed
PMID:7590273   PMID:7708055   PMID:7841789   PMID:8889548   PMID:9006963   PMID:9593676   PMID:9694834   PMID:9737983   PMID:9851930   PMID:10349636   PMID:11042159   PMID:11076861  
PMID:11217851   PMID:12093744   PMID:12361719   PMID:12477932   PMID:12520002   PMID:12954636   PMID:15199144   PMID:15477591   PMID:15767677   PMID:16141072   PMID:16141073   PMID:16751776  
PMID:16778019   PMID:17227886   PMID:17431400   PMID:17609113   PMID:17655826   PMID:17706948   PMID:17827404   PMID:17967808   PMID:17974920   PMID:18174360   PMID:18287559   PMID:18418664  
PMID:18799693   PMID:19131575   PMID:19268530   PMID:19666541   PMID:19800043   PMID:20393820   PMID:20864514   PMID:21267068   PMID:21478464   PMID:21515881   PMID:21521714   PMID:21622535  
PMID:21670149   PMID:21677750   PMID:21779340   PMID:21843524   PMID:21873635   PMID:21918225   PMID:21995792   PMID:22042865   PMID:22337877   PMID:22396141   PMID:22676849   PMID:23622066  
PMID:23653479   PMID:24583925   PMID:24662048   PMID:24952961   PMID:25142465   PMID:25240193   PMID:25561507   PMID:26391398   PMID:26748475   PMID:26762765   PMID:26882989   PMID:26985063  
PMID:27026702   PMID:27077812   PMID:27109382   PMID:27253665   PMID:27268284   PMID:27601471   PMID:27671672   PMID:27834881   PMID:28210900   PMID:28623141   PMID:28842570   PMID:28974699  
PMID:29018082   PMID:29228365   PMID:29291351   PMID:29776451   PMID:30786091   PMID:31387937   PMID:31782806   PMID:31872868   PMID:32015563   PMID:32325033   PMID:32513687  


Genomics

Comparative Map Data
Nr2c2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39692,068,399 - 92,150,039 (+)NCBIGRCm39mm39
GRCm38692,091,418 - 92,173,058 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl692,091,390 - 92,174,294 (+)EnsemblGRCm38mm10GRCm38
MGSCv37692,041,412 - 92,123,052 (+)NCBIGRCm37mm9NCBIm37
MGSCv36692,104,498 - 92,133,463 (+)NCBImm8
Celera693,985,636 - 94,068,601 (+)NCBICelera
Cytogenetic Map6D1NCBI
NR2C2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl314,947,584 - 15,053,600 (+)EnsemblGRCh38hg38GRCh38
GRCh38314,947,583 - 15,049,273 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37314,989,090 - 15,090,780 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37314,989,091 - 15,090,780 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36314,964,240 - 15,065,784 (+)NCBINCBI36hg18NCBI36
Build 34314,964,239 - 15,059,854NCBI
Celera314,927,498 - 15,029,051 (+)NCBI
Cytogenetic Map3p25.1NCBI
HuRef314,980,982 - 15,026,388 (+)NCBIHuRef
CHM1_1314,940,051 - 15,041,737 (+)NCBICHM1_1
Nr2c2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24124,610,216 - 124,666,813 (+)NCBI
Rnor_6.0 Ensembl4124,005,280 - 124,030,349 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04124,005,287 - 124,030,349 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04189,231,452 - 189,256,039 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44126,319,412 - 126,344,808 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14126,564,252 - 126,589,637 (+)NCBI
Celera4113,554,791 - 113,579,853 (+)NCBICelera
Cytogenetic Map4q34NCBI
Nr2c2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542917,386,190 - 17,430,820 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542917,386,190 - 17,430,820 (+)NCBIChiLan1.0ChiLan1.0
NR2C2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1315,220,110 - 15,312,507 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl315,220,110 - 15,306,242 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0314,869,292 - 14,973,977 (+)NCBIMhudiblu_PPA_v0panPan3
NR2C2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl205,052,232 - 5,133,721 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1205,041,656 - 5,139,859 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Nr2c2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936602491,821 - 557,790 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR2C2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1369,464,795 - 69,576,866 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11369,464,798 - 69,577,638 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21376,826,751 - 76,919,612 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NR2C2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12250,882,569 - 50,983,851 (+)NCBI
ChlSab1.1 Ensembl2250,894,802 - 50,977,581 (+)Ensembl
Nr2c2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624872953,428 - 1,028,738 (-)NCBI

Position Markers
36.MMHAP88FLD6.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38692,105,880 - 92,106,030UniSTSGRCm38
MGSCv37692,055,874 - 92,056,024UniSTSGRCm37
Celera694,001,477 - 94,001,627UniSTS
Cytogenetic Map6D1UniSTS
Whitehead_YAC6 UniSTS
NR2C2_2354  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38692,167,506 - 92,168,125UniSTSGRCm38
MGSCv37692,117,500 - 92,118,119UniSTSGRCm37
Celera694,063,049 - 94,063,668UniSTS
Cytogenetic Map6D1UniSTS
Nr2c2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38692,167,664 - 92,167,840UniSTSGRCm38
MGSCv37692,117,658 - 92,117,834UniSTSGRCm37
Celera694,063,207 - 94,063,383UniSTS
Cytogenetic Map6D1UniSTS
cM MapUN UniSTS
cM Map6 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
1301534Idd20_minsulin dependent diabetes susceptibility 20 (mouse)Not determined69203995092716697Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2799
Count of miRNA genes:906
Interacting mature miRNAs:1254
Transcripts:ENSMUST00000113460, ENSMUST00000113463, ENSMUST00000133133, ENSMUST00000133321, ENSMUST00000146175
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001347342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC164642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB613881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC103683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC103684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC103686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ175027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ552234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ567299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ688414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ688965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ689864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ705305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ708521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ713456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ721179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ726202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S75970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U11688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U32939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000113460   ⟹   ENSMUSP00000109087
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl692,091,390 - 92,173,057 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113463   ⟹   ENSMUSP00000109090
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl692,092,433 - 92,167,705 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133133   ⟹   ENSMUSP00000145094
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl692,138,015 - 92,139,832 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133321
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl692,145,727 - 92,156,610 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146175   ⟹   ENSMUSP00000138465
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl692,139,796 - 92,168,668 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204349
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl692,164,177 - 92,174,294 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204497
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl692,156,981 - 92,158,827 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204661
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl692,138,616 - 92,142,233 (+)Ensembl
RefSeq Acc Id: NM_001347342   ⟹   NP_001334271
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39692,069,414 - 92,150,039 (+)NCBI
GRCm38692,092,433 - 92,173,058 (+)NCBI
Sequence:
RefSeq Acc Id: NM_011630   ⟹   NP_035760
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39692,068,399 - 92,150,039 (+)NCBI
GRCm38692,091,418 - 92,173,058 (+)NCBI
MGSCv37692,041,412 - 92,123,052 (+)RGD
Celera693,985,636 - 94,068,601 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505902   ⟹   XP_006505965
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39692,068,636 - 92,150,039 (+)NCBI
GRCm38692,091,655 - 92,173,058 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505904   ⟹   XP_006505967
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39692,068,399 - 92,148,962 (+)NCBI
GRCm38692,091,655 - 92,171,045 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505905   ⟹   XP_006505968
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39692,069,268 - 92,148,026 (+)NCBI
GRCm38692,092,349 - 92,171,981 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505906   ⟹   XP_006505969
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39692,068,484 - 92,148,962 (+)NCBI
GRCm38692,091,595 - 92,171,045 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321518   ⟹   XP_017177007
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39692,068,636 - 92,148,026 (+)NCBI
GRCm38692,091,655 - 92,171,045 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035760   ⟸   NM_011630
- Peptide Label: isoform 2
- UniProtKB: P49117 (UniProtKB/Swiss-Prot),   Q3ZAS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505967   ⟸   XM_006505904
- Peptide Label: isoform X2
- UniProtKB: P49117 (UniProtKB/Swiss-Prot),   Q3ZAS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505969   ⟸   XM_006505906
- Peptide Label: isoform X2
- UniProtKB: P49117 (UniProtKB/Swiss-Prot),   Q3ZAS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505965   ⟸   XM_006505902
- Peptide Label: isoform X1
- UniProtKB: G3X9W4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505968   ⟸   XM_006505905
- Peptide Label: isoform X2
- UniProtKB: P49117 (UniProtKB/Swiss-Prot),   Q3ZAS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017177007   ⟸   XM_017321518
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001334271   ⟸   NM_001347342
- Peptide Label: isoform 1
- UniProtKB: P49117 (UniProtKB/Swiss-Prot),   G3X9W4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000109087   ⟸   ENSMUST00000113460
RefSeq Acc Id: ENSMUSP00000109090   ⟸   ENSMUST00000113463
RefSeq Acc Id: ENSMUSP00000145094   ⟸   ENSMUST00000133133
RefSeq Acc Id: ENSMUSP00000138465   ⟸   ENSMUST00000146175
Protein Domains
NR LBD   Nuclear receptor

Promoters
RGD ID:6890468
Promoter ID:EPDNEW_M8685
Type:multiple initiation site
Name:Nr2c2_1
Description:Mus musculus nuclear receptor subfamily 2, group C, member 2, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38692,091,445 - 92,091,505EPDNEW
RGD ID:6839195
Promoter ID:MM_KWN:46946
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   Brain,   Kidney,   Lung
Transcripts:UC009CYT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36692,118,481 - 92,119,767 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1352466 AgrOrtholog
Ensembl Genes ENSMUSG00000005893 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000109087 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109090 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000138465 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000113460 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113463 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000146175 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22026 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1352466 ENTREZGENE
NCBI Gene 22026 ENTREZGENE
Pfam Hormone_recep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nr2c2 PhenoGen
PRINTS STRDHORMONER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOLI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48508 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt G3X9W4 ENTREZGENE, UniProtKB/TrEMBL
  NR2C2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3U015_MOUSE UniProtKB/TrEMBL
  Q3ZAR9_MOUSE UniProtKB/TrEMBL
  Q3ZAS1 ENTREZGENE, UniProtKB/TrEMBL
  Q5DTL3_MOUSE UniProtKB/TrEMBL
UniProt Secondary P55093 UniProtKB/Swiss-Prot