Sumo3 (small ubiquitin like modifier 3) - Rat Genome Database

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Gene: Sumo3 (small ubiquitin like modifier 3) Heterocephalus glaber
Analyze
Symbol: Sumo3
Name: small ubiquitin like modifier 3
RGD ID: 18908892
Description: ENCODES a protein that exhibits SUMO transferase activity (ortholog); INVOLVED IN positive regulation of ubiquitin-dependent protein catabolic process (ortholog); protein localization to nucleus (ortholog); protein sumoylation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autoimmune polyendocrine syndrome type 1 (ortholog); cataract 9 multiple types (ortholog); FOUND IN glutamatergic synapse (ortholog); nuclear body (ortholog); postsynaptic cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Small ubiquitin-related modifier 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474530,385,940 - 30,393,326 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474530,384,762 - 30,393,454 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Sumo3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474530,385,940 - 30,393,326 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474530,384,762 - 30,393,454 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SUMO3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382144,805,617 - 44,818,062 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2144,805,617 - 44,818,779 (-)EnsemblGRCh38hg38GRCh38
GRCh372146,225,532 - 46,237,977 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362145,049,960 - 45,062,472 (-)NCBINCBI36Build 36hg18NCBI36
Build 342145,049,959 - 45,062,472NCBI
Celera2131,332,860 - 31,345,231 (-)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2131,598,890 - 31,611,428 (-)NCBIHuRef
CHM1_12145,786,069 - 45,798,882 (-)NCBICHM1_1
T2T-CHM13v2.02143,165,885 - 43,178,512 (-)NCBIT2T-CHM13v2.0
Sumo3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,441,931 - 77,454,165 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,441,931 - 77,454,165 (+)EnsemblGRCm39 Ensembl
GRCm381077,606,097 - 77,618,331 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,606,097 - 77,618,331 (+)EnsemblGRCm38mm10GRCm38
MGSCv371077,068,979 - 77,081,076 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361077,049,986 - 77,061,092 (+)NCBIMGSCv36mm8
Celera1078,649,331 - 78,661,426 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Sumo3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82011,009,730 - 11,020,502 (-)NCBIGRCr8
mRatBN7.22011,010,140 - 11,020,850 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2011,010,166 - 11,020,696 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl2011,007,148 - 11,020,877 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2011,709,642 - 11,720,195 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02011,070,611 - 11,081,166 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02011,542,357 - 11,552,911 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02011,726,488 - 11,737,050 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2011,726,497 - 11,737,050 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02013,892,796 - 13,903,349 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42011,393,957 - 11,404,510 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2012,514,863 - 12,525,416 (-)NCBICelera
Cytogenetic Map20p12NCBI
Sumo3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540741,727,181 - 41,732,692 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540741,725,992 - 41,732,692 (-)NCBIChiLan1.0ChiLan1.0
LOC100970998
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21472,213 - 473,935 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11742,766 - 744,488 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01224,215,377 - 224,217,052 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11229,701,496 - 229,703,222 (+)NCBIpanpan1.1PanPan1.1panPan2
SUMO3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13138,472,076 - 38,484,358 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3137,669,343 - 37,682,430 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03138,073,632 - 38,088,790 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3138,074,740 - 38,087,270 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13137,936,323 - 37,951,319 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03137,897,194 - 37,911,794 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03138,412,554 - 38,425,676 (-)NCBIUU_Cfam_GSD_1.0
Sumo3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497137,718,057 - 37,729,250 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367781,392,110 - 1,412,153 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUMO3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13207,476,441 - 207,484,250 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113207,475,303 - 207,484,362 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213217,406,416 - 217,415,476 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SUMO3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1288,516,906 - 88,529,098 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605416,691,675 - 16,703,821 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000026126   ⟹   ENSHGLP00000025897
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474530,385,940 - 30,393,326 (-)Ensembl
RefSeq Acc Id: XM_021256395   ⟹   XP_021112054
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474530,384,762 - 30,393,454 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021112054 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB10468 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025897
RefSeq Acc Id: XP_021112054   ⟸   XM_021256395
- UniProtKB: G5BF89 (UniProtKB/TrEMBL),   A0AAX6STE7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000025897   ⟸   ENSHGLT00000026126


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018431 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026126 ENTREZGENE
InterPro Rad60/SUMO-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Sumo3 ENTREZGENE
PANTHER SMALL UBIQUITIN-RELATED MODIFIER UniProtKB/TrEMBL
  SMALL UBIQUITIN-RELATED MODIFIER 3-RELATED UniProtKB/TrEMBL
Pfam Rad60-SLD UniProtKB/TrEMBL
PROSITE UBIQUITIN_2 UniProtKB/TrEMBL
SMART UBQ UniProtKB/TrEMBL
Superfamily-SCOP Ubiquitin-like UniProtKB/TrEMBL
UniProt A0AAX6STE7 ENTREZGENE, UniProtKB/TrEMBL
  G5BF89 ENTREZGENE, UniProtKB/TrEMBL