Sumo3 (small ubiquitin like modifier 3)

Gene: Sumo3 (small ubiquitin like modifier 3) Chinchilla lanigera

Analyze

Symbol:

Sumo3

Name:

small ubiquitin like modifier 3

RGD ID:

8787080

Description:

ENCODES a protein that exhibits SUMO transferase activity (ortholog); INVOLVED IN positive regulation of ubiquitin-dependent protein catabolic process (ortholog); protein localization to nucleus (ortholog); protein sumoylation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autoimmune polyendocrine syndrome type 1 (ortholog); cataract 9 multiple types (ortholog); FOUND IN glutamatergic synapse (ortholog); nuclear body (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

small ubiquitin-like modifier 3; small ubiquitin-related modifier 3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	41,727,181 - 41,732,692 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	41,725,992 - 41,732,692 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

autoimmune polyendocrine syndrome type 1 (ISO)

cataract 9 multiple types (ISO)

developmental and epileptic encephalopathy 30 (ISO)

homocystinuria (ISO)

Neurodevelopmental Disorders (ISO)

primary ciliary dyskinesia (ISO)

progressive myoclonus epilepsy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of ubiquitin-dependent protein catabolic process (ISO)

protein localization to nucleus (ISO)

protein sumoylation (ISO)

regulation of protein localization to nucleus (ISO)

Cellular Component

glutamatergic synapse (ISO)

nuclear body (ISO)

nucleus (ISO)

PML body (ISO)

postsynaptic cytosol (ISO)

presynaptic cytosol (ISO)

Molecular Function

protein binding (ISO)

SUMO transferase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Sumo3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	41,727,181 - 41,732,692 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	41,725,992 - 41,732,692 (-)	NCBI	ChiLan1.0	ChiLan1.0

SUMO3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	44,805,617 - 44,818,062 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	44,805,617 - 44,818,779 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	46,225,532 - 46,237,977 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	45,049,960 - 45,062,472 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	21	45,049,959 - 45,062,472	NCBI
Celera	21	31,332,860 - 31,345,231 (-)	NCBI		Celera
Cytogenetic Map	21	q22.3	NCBI
HuRef	21	31,598,890 - 31,611,428 (-)	NCBI		HuRef
CHM1_1	21	45,786,069 - 45,798,882 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	43,165,885 - 43,178,512 (-)	NCBI		T2T-CHM13v2.0

Sumo3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	77,441,931 - 77,454,165 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	77,441,931 - 77,454,165 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	77,606,097 - 77,618,331 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	77,606,097 - 77,618,331 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	77,068,979 - 77,081,076 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	77,049,986 - 77,061,092 (+)	NCBI		MGSCv36	mm8
Celera	10	78,649,331 - 78,661,426 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Sumo3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	11,009,730 - 11,020,502 (-)	NCBI		GRCr8
mRatBN7.2	20	11,010,140 - 11,020,850 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	11,010,166 - 11,020,696 (+)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	20	11,007,148 - 11,020,877 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	11,709,642 - 11,720,195 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	11,070,611 - 11,081,166 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	11,542,357 - 11,552,911 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	11,726,488 - 11,737,050 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	11,726,497 - 11,737,050 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	13,892,796 - 13,903,349 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	11,393,957 - 11,404,510 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	12,514,863 - 12,525,416 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

LOC100970998
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	472,213 - 473,935 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	742,766 - 744,488 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	224,215,377 - 224,217,052 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	229,701,496 - 229,703,222 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

SUMO3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	38,472,076 - 38,484,358 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	37,669,343 - 37,682,430 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	38,073,632 - 38,088,790 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	38,074,740 - 38,087,270 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	37,936,323 - 37,951,319 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	37,897,194 - 37,911,794 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	38,412,554 - 38,425,676 (-)	NCBI		UU_Cfam_GSD_1.0

Sumo3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	37,718,057 - 37,729,250 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936778	1,392,110 - 1,412,153 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SUMO3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	207,476,441 - 207,484,250 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	207,475,303 - 207,484,362 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	217,406,416 - 217,415,476 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SUMO3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	88,516,906 - 88,529,098 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666054	16,691,675 - 16,703,821 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sumo3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	30,385,940 - 30,393,326 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624745	30,384,762 - 30,393,454 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013505485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01007876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01007877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01028259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01088717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000010113 ⟹ ENSCLAP00000009983

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955407	41,727,181 - 41,732,692 (-)	Ensembl

RefSeq Acc Id:

XM_013505485 ⟹ XP_013360939

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955407	41,725,992 - 41,732,692 (-)	NCBI

Sequence:

show sequence

GCCCGATGCCGGGGCGCGCGCCTCGTGCACGCGCCCAGCCACGTGACCCCCGCCGGCCAACCGG
CGCGCGGGGATTTGGGGATAAAGCGCGGCCCCGCGAGCAGTTGCGGCGGGAGAGCGGCGCGGCC
GAGAGCGTGACTCGCCCGCTCCGCGCTGCACTTCCGCCGCCCGTCGCCAGCCGCCGCCGTCGCC
GCGCAGCCATGTCTGAGGAGAAGCCCAAGGAGGGTGTGAAGACAGAGAATGACCACATCAATCT
GAAGGTGGCGGGGCAGGACGGCTCGGTGGTGCAGTTCAAGATCAAGAGGCACACCCCACTGAGC
AAGCTGATGAAGGCCTACTGCGAGAGGCAGGGCTTGTCAATGAGACAGATTAGATTCAGGTTTG
ATGGTCAACCCATTAATGAAACAGACACTCCAGCGCAGCTGGAGATGGAGGATGAAGACACCAT
TGACGTGTTCCAGCAGCAGACGGGAGGTACGGCCTCCAGAGGGACCATTCTGCACCCTGCACTT
GCTATGGAATGGTGAGCGCATGACCAAGCTGATCACAGGAGTCTGCAGAAGCCGAGGACAGTCA
CCGAACAACCCTCCTCTGTTGGGTGCCCTTGCAGTGCAACACAGAACTGCATCTACAGAGACAT
GTCTACAGCTTAAATTGGGCCAGATTGTTTTTGATTAGATAAAACGAGTTGTGAGGTTTTTTTT
TTTCAGTTTTGCTTTTCTCTCCCTTCCCAAGCATTTTCCCCCAAGACTTGTTGAATGTTGGCTC
CATCTGTAGCCAGGTTCTCAGCCCAGAGTTGAGATTGCTCATGAGCTGCTTGCCATAATCATGT
AGACAGCTCACATTCTCCCAGTGACTGCGGCTGTGGGACACGGGGGCAAAATTTGACTGACTTG
TAGGCACAGGTTGCTACTATGCTAAGTATTGCAAGTTTAGGCTTTGTCCAACATGTGGTAAAGT
TGAAGGGAAAAATTGGACTGGTTCTTGAAAGGTAAAACTCGCACAGTGAGTTGTTCAGTAATGT
GGCCCCAGGGCTCTCTGCTCCTGATTGTGTCCTCTGGGGTCCTGAAGCTCAGGACACTGTCCCA
CTGTTCACTAGCTGGTGAAGGGTACATGGGCAAAGATTGGCACAACAAAAACTAGCTTTTTCCC
TTTTCATAACATAGAATAAAGTAACTACCACATTTCTCATTCAGTAATTGTATTGTGGCCTCAG
ACTTCTAGTATTTGTATCTGATGAATGATTATGGTCTCCTTATAAAAAAAGATTGATTTTCCTG
AATTTGCAGTTACATTATTGTGTAAAAGAGCTACTTCAAATGTGGTTGCAAAAGAAACCCATGG
AAAGGTGACTTCGTGTTCTTCTCATGGATTTGTGCTCCACCGCTTGATGTCATGCATTAGTATG
GTGACTCCAGTTCTGTGACATATCTTGGGTTCTATGCCAGTTAAAATGTTCATAGTTCTGCCTA
TTGTCCTTCTCTAAGGATCCATTGCTGCTTGACAGCCATTCTCTGACTTTCACAGTCACCTGAC
AATGATCTGCCATCTCTTGCTTGCTTGAAATCCTGCAAAAAGTGTTCTTTCCTTTGTTTTGCTG
TATGGGCTTGGGGTGGGATGTTCGTTGGCTCTATTGTGTTTATTCACCAATTTGTACATTATTT
GTTGTCCTTTACTACTGTAAACAGTAAATATAGTTTGGTATTCTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_013360939	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000009983
	ENSCLAP00000009983.1

RefSeq Acc Id:	XP_013360939 ⟸ XM_013505485
- Sequence:	show sequence MPGRAPRARAQPRDPRRPTGARGFGDKARPREQLRRESGAAESVTRPLRAALPPPVASRRRRRA AMSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDG QPINETDTPAQLEMEDEDTIDVFQQQTGGTASRGTILHPALAMEW hide sequence

RefSeq Acc Id:

ENSCLAP00000009983 ⟸ ENSCLAT00000010113

Protein Domains

Ubiquitin-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000006914	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000010113	ENTREZGENE
	ENSCLAT00000010113.1	UniProtKB/TrEMBL
InterPro	Rad60/SUMO-like_dom	UniProtKB/TrEMBL
	Ubiquitin-like_dom	UniProtKB/TrEMBL
	Ubiquitin-like_domsf	UniProtKB/TrEMBL
NCBI Gene	Sumo3	ENTREZGENE
PANTHER	SMALL UBIQUITIN-RELATED MODIFIER	UniProtKB/TrEMBL
	SMALL UBIQUITIN-RELATED MODIFIER 3	UniProtKB/TrEMBL
Pfam	Rad60-SLD	UniProtKB/TrEMBL
PROSITE	UBIQUITIN_2	UniProtKB/TrEMBL
SMART	UBQ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54236	UniProtKB/TrEMBL
UniProt	A0A8C2V4F6_CHILA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-03-05	Sumo3	small ubiquitin like modifier 3		small ubiquitin-like modifier 3	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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