Wdr83 (WD repeat domain 83) - Rat Genome Database

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Gene: Wdr83 (WD repeat domain 83) Heterocephalus glaber
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Symbol: Wdr83
Name: WD repeat domain 83
RGD ID: 18908689
Description: ENCODES a protein that exhibits kinase activity (inferred); INVOLVED IN inflammatory response to wounding (ortholog); neural tube closure (ortholog); placenta blood vessel development (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); attention deficit hyperactivity disorder (ortholog); FOUND IN catalytic step 2 spliceosome (inferred); cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Mitogen-activated protein kinase organizer 1; WD repeat domain-containing protein 83
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624901310,709 - 315,054 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624901310,709 - 315,302 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Wdr83
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624901310,709 - 315,054 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624901310,709 - 315,302 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
WDR83
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381912,666,807 - 12,675,832 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1912,666,802 - 12,675,832 (+)EnsemblGRCh38hg38GRCh38
GRCh371912,777,621 - 12,786,646 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,638,628 - 12,647,646 (+)NCBINCBI36Build 36hg18NCBI36
Celera1912,667,332 - 12,676,360 (+)NCBICelera
Cytogenetic Map19p13.13NCBI
HuRef1912,350,706 - 12,359,681 (+)NCBIHuRef
CHM1_11912,778,123 - 12,787,151 (+)NCBICHM1_1
T2T-CHM13v2.01912,791,305 - 12,800,330 (+)NCBIT2T-CHM13v2.0
Wdr83
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,801,664 - 85,807,375 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,801,664 - 85,807,935 (-)EnsemblGRCm39 Ensembl
GRCm38885,075,035 - 85,080,746 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,075,035 - 85,081,306 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,598,934 - 87,604,645 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36887,965,140 - 87,970,851 (-)NCBIMGSCv36mm8
Celera889,369,518 - 89,375,212 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.55NCBI
Wdr83
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81939,981,890 - 39,987,443 (+)NCBIGRCr8
mRatBN7.21923,076,948 - 23,082,569 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,077,010 - 23,082,563 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1929,899,631 - 29,905,180 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01930,553,995 - 30,559,544 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01932,776,676 - 32,782,225 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01926,188,644 - 26,194,193 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1926,188,638 - 26,194,198 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01937,164,267 - 37,169,816 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41924,733,303 - 24,738,851 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11924,738,197 - 24,743,526 (+)NCBI
Celera1922,634,987 - 22,640,536 (+)NCBICelera
Cytogenetic Map19q11NCBI
Wdr83
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541531,774,017 - 31,778,737 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541531,774,017 - 31,778,737 (+)NCBIChiLan1.0ChiLan1.0
WDR83
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22017,598,671 - 17,604,770 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11916,599,248 - 16,605,191 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01912,231,876 - 12,237,997 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11912,976,952 - 12,983,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1912,976,952 - 12,983,221 (+)Ensemblpanpan1.1panPan2
WDR83
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,439,387 - 49,443,661 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,439,387 - 49,443,661 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2049,312,973 - 49,317,906 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02049,958,059 - 49,963,003 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,955,712 - 49,962,345 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,168,867 - 49,173,798 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,595,610 - 49,600,540 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,837,920 - 49,842,852 (-)NCBIUU_Cfam_GSD_1.0
Wdr83
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,550,440 - 208,558,764 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,796,067 - 1,803,683 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,796,030 - 1,803,714 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR83
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl266,307,653 - 66,312,844 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1266,307,652 - 66,312,839 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,686,846 - 66,692,001 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WDR83
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,358,172 - 11,364,301 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl611,358,254 - 11,364,147 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660748,433,203 - 8,439,322 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000019069   ⟹   ENSHGLP00000018880
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624901310,709 - 315,054 (+)Ensembl
RefSeq Acc Id: XM_004872372   ⟹   XP_004872429
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624901310,709 - 315,302 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004872429 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB14490 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018880
  ENSHGLP00100024651
GenBank Protein JAO01478 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004872429   ⟸   XM_004872372
- UniProtKB: G5BYX9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000018880   ⟸   ENSHGLT00000019069


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013534 Ensembl, ENTREZGENE
  ENSHGLG00100018103 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000019069 ENTREZGENE
  ENSHGLT00100024904 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WD_repeat_MORG1 UniProtKB/TrEMBL
KEGG Report hgl:101708669 UniProtKB/TrEMBL
NCBI Gene Wdr83 ENTREZGENE
PANTHER WD REPEAT DOMAIN-CONTAINING PROTEIN 83 UniProtKB/TrEMBL
  WD40 REPEAT PROTEIN UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt G5BYX9 ENTREZGENE, UniProtKB/TrEMBL