Wdr83 (WD repeat domain containing 83)

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Gene: Wdr83 (WD repeat domain containing 83) Mus musculus

Analyze

Symbol:

Wdr83

Name:

WD repeat domain containing 83

RGD ID:

1332476

MGI Page

MGI

Description:

Involved in several processes, including cytokine production; inflammatory response to wounding; and response to lipopolysaccharide. Localizes to cytoplasm and nucleus. Is expressed in embryo. Orthologous to human WDR83 (WD repeat domain 83); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; ethanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

1500041N16Rik; MAPK cascade scaffold protein; MAPK organizer 1; mitogen-activated protein kinase organizer 1; Mor; Morg1; WD repeat domain-containing protein 83

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WDR83 (WD repeat domain 83)	HGNC	Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Wdr83 (WD repeat domain 83)	HGNC	Treefam, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Wdr83 (WD repeat domain 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WDR83 (WD repeat domain 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WDR83 (WD repeat domain 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Wdr83 (WD repeat domain 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WDR83 (WD repeat domain 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	WDR83 (WD repeat domain 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Wdr83 (WD repeat domain 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Wdr83 (WD repeat domain 83)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	WDR83 (WD repeat domain 83)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	wdr83 (WD repeat domain containing 83)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam\|ZFIN)
Caenorhabditis elegans (roundworm):	F33G12.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Drosophila melanogaster (fruit fly):	CG4935	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	85,801,664 - 85,807,375 (-)	NCBI	GRCm39		mm39
GRCm38	8	85,075,035 - 85,080,746 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	85,075,035 - 85,081,306 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	87,598,934 - 87,604,645 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	87,965,140 - 87,970,851 (-)	NCBI			mm8
Celera	8	89,369,518 - 89,375,212 (-)	NCBI		Celera
Cytogenetic Map	8	C3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

attention deficit hyperactivity disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

clofibrate (ISO)

dexamethasone (ISO)

diazinon (ISO)

dibutyl phthalate (ISO)

disodium selenite (ISO)

endosulfan (ISO)

ethanol (EXP)

indometacin (ISO)

methyl methanesulfonate (ISO)

rac-lactic acid (ISO)

tetrachloroethene (EXP)

thapsigargin (ISO)

tris(2-butoxyethyl) phosphate (ISO)

tunicamycin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

inflammatory response to wounding (IMP)

mRNA processing (IEA)

mRNA splicing, via spliceosome (ISO)

regulation of I-kappaB kinase/NF-kappaB signaling (IMP)

response to hypoxia (IMP)

response to lipopolysaccharide (IMP)

response to wounding (IMP)

RNA splicing (IEA)

RNA splicing, via transesterification reactions (ISO)

Cellular Component

catalytic step 2 spliceosome (ISO)

cytoplasm (IDA,ISO)

nucleus (IDA)

spliceosomal complex (ISO)

Molecular Function

molecular_function (ND)

protein binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal placenta development (IAGP)

abnormal vascular development (IAGP)

decreased blood urea nitrogen level (IAGP)

decreased circulating creatinine level (IAGP)

decreased renal tubule apoptosis (IAGP)

decreased susceptibility to kidney reperfusion injury (IAGP)

embryonic lethality during organogenesis, complete penetrance (IAGP)

kidney inflammation (IAGP)

References

References - curated


1.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGD and Homologene mouse data transfer
3.	MGD data from the GO Consortium
4.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	RGD automated import pipeline
6.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	RGD automated import pipeline for gene-chemical interactions
8.	Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:12477932	PMID:15118098	PMID:15489334	PMID:16141072	PMID:16141073	PMID:16751776	PMID:19726548	PMID:21267068
PMID:21677750	PMID:22555025	PMID:22982595	PMID:24030251	PMID:25550320	PMID:28992060	PMID:29091030	PMID:29402223	PMID:30196744

Genomics

Comparative Map Data

Wdr83
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	85,801,664 - 85,807,375 (-)	NCBI	GRCm39		mm39
GRCm38	8	85,075,035 - 85,080,746 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	85,075,035 - 85,081,306 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	87,598,934 - 87,604,645 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	87,965,140 - 87,970,851 (-)	NCBI			mm8
Celera	8	89,369,518 - 89,375,212 (-)	NCBI		Celera
Cytogenetic Map	8	C3	NCBI

WDR83
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	12,666,802 - 12,675,832 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	12,666,807 - 12,675,832 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	12,777,618 - 12,786,646 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	12,638,628 - 12,647,646 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	19	12,667,332 - 12,676,360 (+)	NCBI
Cytogenetic Map	19	p13.13	NCBI
HuRef	19	12,350,706 - 12,359,681 (+)	NCBI		HuRef
CHM1_1	19	12,778,123 - 12,787,151 (+)	NCBI		CHM1_1

Wdr83
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	19	26,188,644 - 26,194,193 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	26,188,638 - 26,194,198 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	37,164,267 - 37,169,816 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	24,733,303 - 24,738,851 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	19	24,738,197 - 24,743,526 (+)	NCBI
Celera	19	22,634,987 - 22,640,536 (+)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

Wdr83
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	31,774,017 - 31,778,737 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	31,774,017 - 31,778,737 (+)	NCBI	ChiLan1.0	ChiLan1.0

WDR83
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	12,976,952 - 12,983,221 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	12,976,952 - 12,983,221 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	12,231,876 - 12,237,997 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

WDR83
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	49,439,387 - 49,443,661 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	49,439,387 - 49,443,661 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Wdr83
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936659	1,796,030 - 1,803,714 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WDR83
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	66,307,653 - 66,312,844 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	66,307,652 - 66,312,839 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	66,686,846 - 66,692,001 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WDR83
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	11,358,172 - 11,364,301 (+)	NCBI
ChlSab1.1 Ensembl	6	11,358,254 - 11,364,147 (+)	Ensembl

Wdr83
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624901	310,709 - 315,302 (+)	NCBI

Position Markers

MARC_7999-8000:996688236:1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	15	12,181,265 - 12,181,454	UniSTS	GRCm38
GRCm38	8	85,081,241 - 85,081,999	UniSTS	GRCm38
MGSCv37	8	87,605,140 - 87,605,898	UniSTS	GRCm37
MGSCv37	15	12,111,020 - 12,111,209	UniSTS	GRCm37
Celera	15	11,960,642 - 11,960,831	UniSTS
Celera	8	89,375,707 - 89,376,465	UniSTS
Cytogenetic Map	15	A1	UniSTS
Cytogenetic Map	15	A	UniSTS
Cytogenetic Map	8	C3	UniSTS

UniSTS:225076

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	85,074,974 - 85,075,158	UniSTS	GRCm38
MGSCv37	8	87,598,873 - 87,599,057	UniSTS	GRCm37
Celera	8	89,369,457 - 89,369,641	UniSTS
Cytogenetic Map	8	C3	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	70305375	104305495	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	70305375	104305495	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71102903	105103009	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71136783	90202598	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71287817	123895615	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71287817	123895615	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	71396181	105396393	Mouse
1300920	Pitm3_m	prion incubation time 3 (mouse)			Not determined		8	73202495	107202598	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	73400000	126100000	Mouse
1558890	Lith18_m	lithogenic gene 18 (mouse)			Not determined		8	75675517	109675623	Mouse
1357470	Obq16_m	obesity QTL 16 (mouse)			Not determined		8	75685348	109685497	Mouse
1301808	Nhdlq1_m	non-HDL QTL 1 (mouse)			Not determined		8	75685348	109685497	Mouse
1301874	Hdlq16_m	HDL QTL 16 (mouse)			Not determined		8	75685348	109685497	Mouse
10412234	Nhdlq14_m	non-HDL QTL 14 (mouse)			Not determined		8	75685348	109685497	Mouse
1301099	Cbm2_m	cerebellum weight 2 (mouse)			Not determined		8	78518613	112518703	Mouse
1301581	Char2_m	P. chabaudi malaria resistance QTL 2 (mouse)			Not determined		8	79082178	113082403	Mouse
12904012	Cfq10_m	conditioned fear QTL 10 (mouse)					8	80066775	89014359	Mouse
10755530	Wbc2_m	white blood cell count 2 (mouse)					8	81092664	115092664	Mouse
10755519	Wbc1_m	white blood cell count 1 (mouse)					8	81619151	115619151	Mouse
1301766	Desp1_m	despair 1 (mouse)			Not determined		8	84759576	118759741	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1326
Count of miRNA genes:	476
Interacting mature miRNAs:	557
Transcripts:	ENSMUST00000093357, ENSMUST00000131909, ENSMUST00000135463, ENSMUST00000136696, ENSMUST00000142201, ENSMUST00000145880, ENSMUST00000146900, ENSMUST00000149050, ENSMUST00000152186, ENSMUST00000152785
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_026399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC163703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK005790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK020654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY365434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC005587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC019369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC020047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC034842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC094624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ556650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000093357 ⟹ ENSMUSP00000091048

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	85,075,035 - 85,080,746 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000131909

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	85,075,035 - 85,080,632 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000135463

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	85,079,695 - 85,080,669 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000136696

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	85,075,035 - 85,080,703 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000142201 ⟹ ENSMUSP00000122737

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	85,075,037 - 85,076,107 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000145880

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	85,075,036 - 85,079,915 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000146900

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	85,075,038 - 85,076,291 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000149050 ⟹ ENSMUSP00000121568

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	85,076,124 - 85,080,674 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000152186

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	85,075,052 - 85,081,306 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000152785 ⟹ ENSMUSP00000122127

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	85,075,828 - 85,080,673 (-)	Ensembl

RefSeq Acc Id:

NM_026399 ⟹ NP_080675

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	85,801,664 - 85,807,375 (-)	NCBI
GRCm38	8	85,075,035 - 85,080,746 (-)	ENTREZGENE
MGSCv37	8	87,598,934 - 87,604,645 (-)	RGD
Celera	8	89,369,518 - 89,375,212 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

GCAAAGCAGGAAATAAATCCTGGGGGACAATAATAATGTTACACTCGAGCAAGTCTCTTTGAAA
GCTTGGGAGGACGGTGGTCTCAATACATCAGCAGTAAAGCAGGCAGCGGACTGATGCATTTAAA
AGTATGGCTTTTCCCGAGCCAAAGCCGCGGGCACCGGAGCTGCCGCAGAAACGGATGAAGACGC
TGGACTGCAGCCAGGGCGCGGTGCGAGCCGTGCGATTTAATGTGGACGGCAACTACTGCCTGAC
GTGCGGCAGCGATAAAACCCTAAAGCTGTGGAACCCGCTGCGTGGGACGCTGCTGCGGACCTAC
AGTGGCCACGGCTACGAAGTGCTAGATGCGGCTGGCTCCTTTGATAACAGCCATCTCTGTTCTG
GTGGCGGGGACAAGACGGTGGTGCTGTGGGATGTAGCAACTGGGCAGGTCGTGCGCAAATTTCG
GGGCCACGCTGGAAAGGTGAACACCGTTCAGTTTAATGAAGAGGCTACAGTCATCCTGTCTGGT
TCTATCGATTCCAGTGTCCGATGTTGGGATTGTCGTTCTCGGAAGCCTGAGCCGGTGCAAACAC
TAGATGAAGCTAGAGACGGCATATCCAGTGTAAAGGTGTCAGACCATGAGATCTTGGCAGGCTC
TGTGGATGGCCGCGTGAGGCGCTATGACCTAAGGATGGGACAGGTCTCCTCAGACTACGTGGGC
AGCCCTATCACCTGCACCTGCTTCAGCCGGGACGGGCAGTGCACTCTGATATCCAGCCTGGACT
CTACTCTGCGGCTTCTAGATAAAGACACAGGGGAGCTGCTGGGCGAGTATGTTGGCCATAAGAA
CCAGCAGTACAAGCTGGACTGCTGCCTGAGTGAGCGCGACACACATGTGGTCAGCTGCTCTGAA
GACGGGAAAGTGTTCTTCTGGGACCTGGTAGAGGGTGCCTTGGCACTGGCCCTGCCTGTGGGTT
CTAATGTGGTACAGTCACTGGCTTACCATCCCACGGAACCCTGCCTACTGACTGCCATGGGAGG
CAGCATCCAGTACTGGCGAGAAGAGACCTATGAGGCAGAGGGTGGAGCAGGCTGAGGCTTACGG
ACCTGACACCAAGGATGCAGACTGACTCAGAAAACCCAACCAAAGGGCCATTTATTCTAGAGAT
GCTGCTGACCAAGGAGTGGGCCTAGGGAGGGGCTGGCATGTAAAGTAATAAATAAAGGTGTGGC
AAAAAGCCTCAGTCTTTACCAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_080675	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH05587	(Get FASTA)	NCBI Sequence Viewer
	AAH19369	(Get FASTA)	NCBI Sequence Viewer
	AAH94624	(Get FASTA)	NCBI Sequence Viewer
	AAQ64635	(Get FASTA)	NCBI Sequence Viewer
	BAB24241	(Get FASTA)	NCBI Sequence Viewer
	BAB32164	(Get FASTA)	NCBI Sequence Viewer
	EDL10996	(Get FASTA)	NCBI Sequence Viewer
	EDL10997	(Get FASTA)	NCBI Sequence Viewer
	EDL10998	(Get FASTA)	NCBI Sequence Viewer
	Q9DAJ4	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_080675 ⟸ NM_026399

- UniProtKB:

Q9DAJ4 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAFPEPKPRAPELPQKRMKTLDCSQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYS
GHGYEVLDAAGSFDNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGS
IDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDLRMGQVSSDYVGS
PITCTCFSRDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQQYKLDCCLSERDTHVVSCSED
GKVFFWDLVEGALALALPVGSNVVQSLAYHPTEPCLLTAMGGSIQYWREETYEAEGGAG

hide sequence

RefSeq Acc Id:

ENSMUSP00000122127 ⟸ ENSMUST00000152785

RefSeq Acc Id:

ENSMUSP00000091048 ⟸ ENSMUST00000093357

RefSeq Acc Id:

ENSMUSP00000121568 ⟸ ENSMUST00000149050

RefSeq Acc Id:

ENSMUSP00000122737 ⟸ ENSMUST00000142201

Protein Domains

WD_REPEATS_REGION

Promoters

RGD ID:

8667745

Promoter ID:

EPDNEW_M11904

Type:

initiation region

Name:

Wdr83_1

Description:

Mus musculus WD repeat domain containing 83 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	85,080,706 - 85,080,766	EPDNEW

RGD ID:

6843897

Promoter ID:

MM_KWN:55140

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000005281, NM_026399, OTTMUST00000074324, OTTMUST00000074325, OTTMUST00000074326, OTTMUST00000074327, OTTMUST00000074330, OTTMUST00000074331, OTTMUST00000083784

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	87,604,416 - 87,605,427 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1915086	AgrOrtholog
Ensembl Genes	ENSMUSG00000005150	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000091048	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000121568	UniProtKB/Swiss-Prot
	ENSMUSP00000122127	UniProtKB/TrEMBL
	ENSMUSP00000122737	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000093357	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000142201	UniProtKB/TrEMBL
	ENSMUST00000149050	UniProtKB/Swiss-Prot
	ENSMUST00000152785	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	G-protein_beta_WD-40_rep	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:67836	UniProtKB/Swiss-Prot
MGD	MGI:1915086	ENTREZGENE
NCBI Gene	67836	ENTREZGENE
Pfam	WD40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Wdr83	PhenoGen
PRINTS	GPROTEINBRPT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	WD_REPEATS_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	WD40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene	Mm.334680	ENTREZGENE
UniProt	D6RGR4_MOUSE	UniProtKB/TrEMBL
	F7C259_MOUSE	UniProtKB/TrEMBL
	Q9DAJ4	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q505C2	UniProtKB/Swiss-Prot
	Q8VEB7	UniProtKB/Swiss-Prot
	Q99JX9	UniProtKB/Swiss-Prot
	Q9D235	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar