Mrpl34 (mitochondrial ribosomal protein L34) - Rat Genome Database

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Gene: Mrpl34 (mitochondrial ribosomal protein L34) Heterocephalus glaber
Analyze
Symbol: Mrpl34
Name: mitochondrial ribosomal protein L34
RGD ID: 18905665
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L34, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908638,464 - 639,451 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908638,460 - 639,430 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mrpl34
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908638,464 - 639,451 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908638,460 - 639,430 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MRPL34
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,292,573 - 17,306,843 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,292,609 - 17,306,843 (+)EnsemblGRCh38hg38GRCh38
GRCh371917,403,382 - 17,417,652 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,277,477 - 17,278,652 (+)NCBINCBI36Build 36hg18NCBI36
Build 341917,277,476 - 17,278,652NCBI
Celera1917,318,207 - 17,319,381 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1916,983,036 - 16,984,210 (+)NCBIHuRef
CHM1_11917,415,950 - 17,417,125 (+)NCBICHM1_1
T2T-CHM13v2.01917,427,458 - 17,441,733 (+)NCBIT2T-CHM13v2.0
Mrpl34
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,917,570 - 71,918,397 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,917,603 - 71,918,391 (+)EnsemblGRCm39 Ensembl
GRCm38871,464,926 - 71,465,753 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,464,959 - 71,465,747 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,988,825 - 73,989,652 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36874,393,963 - 74,394,735 (+)NCBIMGSCv36mm8
Celera873,984,143 - 73,984,970 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.43NCBI
Mrpl34
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,186,447 - 18,187,182 (+)NCBIGRCr8
mRatBN7.21618,152,470 - 18,153,205 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,151,342 - 18,153,208 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,203,461 - 18,204,196 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,336,097 - 19,336,832 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,256,391 - 18,257,126 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,874,034 - 19,874,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,874,034 - 19,874,768 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,734,113 - 19,736,135 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,636,144 - 18,636,879 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11618,636,141 - 18,636,876 (+)NCBI
Celera1618,357,549 - 18,358,284 (+)NCBICelera
Cytogenetic Map16p14NCBI
Mrpl34
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955524922,148 - 923,107 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955524922,148 - 923,107 (-)NCBIChiLan1.0ChiLan1.0
MRPL34
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22022,174,284 - 22,177,728 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11921,181,102 - 21,184,331 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01916,793,461 - 16,794,635 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11917,767,706 - 17,768,880 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1917,767,706 - 17,768,880 (+)Ensemblpanpan1.1panPan2
MRPL34
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,449,510 - 45,451,934 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,449,611 - 45,450,501 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,362,691 - 45,364,274 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,935,755 - 45,937,338 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12045,172,405 - 45,173,971 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,582,191 - 45,583,774 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,858,037 - 45,859,620 (-)NCBIUU_Cfam_GSD_1.0
Mrpl34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,006,516 - 204,007,657 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,555,607 - 3,563,821 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,555,655 - 3,556,759 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL34
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,377,906 - 60,378,874 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,377,904 - 60,378,967 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MRPL34
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,812,233 - 15,813,425 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl615,811,876 - 15,813,958 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660743,628,708 - 3,630,188 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000004490   ⟹   ENSHGLP00000004428
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624908638,464 - 639,451 (-)Ensembl
RefSeq Acc Id: XM_004873235   ⟹   XP_004873292
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624908638,460 - 639,430 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004873292 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB05365 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000004428
  ENSHGLP00100059329
RefSeq Acc Id: XP_004873292   ⟸   XM_004873235
- UniProtKB: G5B7V4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000004428   ⟸   ENSHGLT00000004490


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003238 Ensembl, ENTREZGENE
  ENSHGLG00100050687 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000004490 ENTREZGENE
  ENSHGLT00100054558 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.3980 UniProtKB/TrEMBL
InterPro Ribosomal_L34 UniProtKB/TrEMBL
KEGG Report hgl:101720098 UniProtKB/TrEMBL
NCBI Gene Mrpl34 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L34, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR14503 UniProtKB/TrEMBL
Pfam Ribosomal_L34 UniProtKB/TrEMBL
UniProt G5B7V4 ENTREZGENE, UniProtKB/TrEMBL