Mrpl34 (mitochondrial ribosomal protein L34) - Rat Genome Database
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Gene: Mrpl34 (mitochondrial ribosomal protein L34) Mus musculus
Analyze
Symbol: Mrpl34
Name: mitochondrial ribosomal protein L34
RGD ID: 1553633
MGI Page MGI
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Localizes to mitochondrion. Orthologous to human MRPL34 (mitochondrial ribosomal protein L34); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 0610007O17Rik; 39S ribosomal protein L34, mitochondrial; D8Bwg1484e; L34mt; MRP-L34
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,917,570 - 71,918,397 (+)NCBIGRCm39mm39
GRCm38871,464,926 - 71,465,753 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,464,959 - 71,465,747 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,988,825 - 73,989,652 (+)NCBIGRCm37mm9NCBIm37
MGSCv36874,393,963 - 74,394,735 (+)NCBImm8
Celera873,984,143 - 73,984,970 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (ISO)

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18614015   PMID:21677750   PMID:21873635  
PMID:32325033   PMID:32987154  


Genomics

Comparative Map Data
Mrpl34
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,917,570 - 71,918,397 (+)NCBIGRCm39mm39
GRCm38871,464,926 - 71,465,753 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,464,959 - 71,465,747 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,988,825 - 73,989,652 (+)NCBIGRCm37mm9NCBIm37
MGSCv36874,393,963 - 74,394,735 (+)NCBImm8
Celera873,984,143 - 73,984,970 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.43NCBI
MRPL34
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1917,292,609 - 17,306,843 (+)EnsemblGRCh38hg38GRCh38
GRCh381917,302,865 - 17,306,843 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371917,413,616 - 17,417,652 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,277,477 - 17,278,652 (+)NCBINCBI36hg18NCBI36
Build 341917,277,476 - 17,278,652NCBI
Celera1917,318,207 - 17,319,381 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1916,983,036 - 16,984,210 (+)NCBIHuRef
CHM1_11917,415,950 - 17,417,125 (+)NCBICHM1_1
Mrpl34
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01619,874,034 - 19,874,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,874,034 - 19,874,768 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,734,113 - 19,736,135 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,636,144 - 18,636,879 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11618,636,141 - 18,636,876 (+)NCBI
Celera1618,357,549 - 18,358,284 (+)NCBICelera
Cytogenetic Map16p14NCBI
Mrpl34
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955524922,148 - 923,107 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955524922,148 - 923,107 (-)NCBIChiLan1.0ChiLan1.0
MRPL34
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11917,767,706 - 17,768,880 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1917,767,706 - 17,768,880 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01916,793,461 - 16,794,635 (+)NCBIMhudiblu_PPA_v0panPan3
MRPL34
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2045,449,611 - 45,450,501 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12045,449,510 - 45,451,934 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Mrpl34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365963,555,655 - 3,556,759 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL34
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,377,905 - 60,378,874 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,377,904 - 60,378,967 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MRPL34
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,812,233 - 15,813,425 (+)NCBI
ChlSab1.1 Ensembl615,811,876 - 15,813,958 (+)Ensembl
Mrpl34
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624908638,460 - 639,430 (-)NCBI

Position Markers
RH125067  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,465,498 - 71,465,620UniSTSGRCm38
MGSCv37873,989,397 - 73,989,519UniSTSGRCm37
Celera873,984,715 - 73,984,837UniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map8B3.3UniSTS
D8Bwg1484e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,465,548 - 71,465,717UniSTSGRCm38
MGSCv37873,989,447 - 73,989,616UniSTSGRCm37
Celera873,984,765 - 73,984,934UniSTS
Cytogenetic Map8B3.3UniSTS
cM Map833.5UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:104
Count of miRNA genes:96
Interacting mature miRNAs:101
Transcripts:ENSMUST00000048914
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000048914   ⟹   ENSMUSP00000044497
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,464,959 - 71,465,747 (+)Ensembl
RefSeq Acc Id: NM_053162   ⟹   NP_444392
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,917,570 - 71,918,397 (+)NCBI
GRCm38871,464,926 - 71,465,753 (+)ENTREZGENE
MGSCv37873,988,825 - 73,989,652 (+)RGD
Celera873,984,143 - 73,984,970 (+)RGD
cM Map8 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_444392   ⟸   NM_053162
- UniProtKB: Q99N91 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000044497   ⟸   ENSMUST00000048914

Promoters
RGD ID:8667395
Promoter ID:EPDNEW_M11729
Type:initiation region
Name:Mrpl34_1
Description:Mus musculus mitochondrial ribosomal protein L34 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38871,464,947 - 71,465,007EPDNEW
RGD ID:6843490
Promoter ID:MM_KWN:54783
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_053162
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,988,551 - 73,989,051 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2137227 AgrOrtholog
Ensembl Genes ENSMUSG00000034880 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000044497 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000048914 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Ribosomal_L34 UniProtKB/Swiss-Prot
KEGG Report mmu:94065 UniProtKB/Swiss-Prot
MGD MGI:2137227 ENTREZGENE
NCBI Gene 94065 ENTREZGENE
PANTHER PTHR14503 UniProtKB/Swiss-Prot
Pfam Ribosomal_L34 UniProtKB/Swiss-Prot
PhenoGen Mrpl34 PhenoGen
TIGRFAMs rpmH_bact UniProtKB/Swiss-Prot
UniGene Mm.29489 ENTREZGENE
UniProt Q99N91 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TDJ8 UniProtKB/Swiss-Prot