MRPL34 (mitochondrial ribosomal protein L34)

Gene: MRPL34 (mitochondrial ribosomal protein L34) Sus scrofa

Analyze

Symbol:

MRPL34

Name:

mitochondrial ribosomal protein L34

RGD ID:

14226921

Description:

ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN mitochondrial large ribosomal subunit (inferred); mitochondrion (inferred); ribonucleoprotein complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

39S ribosomal protein L34, mitochondrial

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	60,377,906 - 60,378,874 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	60,377,904 - 60,378,967 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

translation (IEA)

Cellular Component

mitochondrial large ribosomal subunit (IEA)

mitochondrion (IEA)

ribonucleoprotein complex (IEA)

ribosome (IEA)

Molecular Function

structural constituent of ribosome (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

MRPL34
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	60,377,906 - 60,378,874 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	60,377,904 - 60,378,967 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

MRPL34
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	17,292,573 - 17,306,843 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	17,292,609 - 17,306,843 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	17,403,382 - 17,417,652 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	17,277,477 - 17,278,652 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	17,277,476 - 17,278,652	NCBI
Celera	19	17,318,207 - 17,319,381 (+)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	16,983,036 - 16,984,210 (+)	NCBI		HuRef
CHM1_1	19	17,415,950 - 17,417,125 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	17,427,458 - 17,441,733 (+)	NCBI		T2T-CHM13v2.0

Mrpl34
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	71,917,570 - 71,918,397 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	71,917,603 - 71,918,391 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	71,464,926 - 71,465,753 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	71,464,959 - 71,465,747 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	73,988,825 - 73,989,652 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	74,393,963 - 74,394,735 (+)	NCBI		MGSCv36	mm8
Celera	8	73,984,143 - 73,984,970 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.43	NCBI

Mrpl34
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	18,186,447 - 18,187,182 (+)	NCBI		GRCr8
mRatBN7.2	16	18,152,470 - 18,153,205 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	18,151,342 - 18,153,208 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	18,203,461 - 18,204,196 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	19,336,097 - 19,336,832 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	18,256,391 - 18,257,126 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	19,874,034 - 19,874,769 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	19,874,034 - 19,874,768 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	19,734,113 - 19,736,135 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	18,636,144 - 18,636,879 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	18,636,141 - 18,636,876 (+)	NCBI
Celera	16	18,357,549 - 18,358,284 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

Mrpl34
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	922,148 - 923,107 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	922,148 - 923,107 (-)	NCBI	ChiLan1.0	ChiLan1.0

MRPL34
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	22,174,284 - 22,177,728 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	21,181,102 - 21,184,331 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	16,793,461 - 16,794,635 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	17,767,706 - 17,768,880 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	17,767,706 - 17,768,880 (+)	Ensembl	panpan1.1		panPan2

MRPL34
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	45,449,510 - 45,451,934 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	45,449,611 - 45,450,501 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	45,362,691 - 45,364,274 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	45,935,755 - 45,937,338 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	20	45,172,405 - 45,173,971 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	45,582,191 - 45,583,774 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	45,858,037 - 45,859,620 (-)	NCBI		UU_Cfam_GSD_1.0

Mrpl34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	204,006,516 - 204,007,657 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	3,555,607 - 3,563,821 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	3,555,655 - 3,556,759 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPL34
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	15,812,233 - 15,813,425 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	15,811,876 - 15,813,958 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	3,628,708 - 3,630,188 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrpl34
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	638,464 - 639,451 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	638,460 - 639,430 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in MRPL34
4 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	10	4	3	5	2	22	2	3	3
Low						1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021083568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01056737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000042606 ⟹ ENSSSCP00000037421

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	60,377,906 - 60,378,874 (-)	Ensembl

RefSeq Acc Id:

XM_021083568 ⟹ XP_020939227

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	60,377,904 - 60,378,967 (-)	NCBI

Sequence:

show sequence

GGCGCGCAGACGTAGAACTACAATTCCGGGAGGCCCCCGCGGCAAGGAAGGCTCCGCTGTAGGA
AAAACTACAACTCCCAGAAGTCCTCGTTCGCAGCTGCGGAACCTACGGGTTTCGGAATAGCTGC
CACTGGACGGAGTGCCGGCGGCTGGACATGGCTTTCTTGGCTAGATCCGTGGGTCGCCTCTTGG
ACCCCGTCAGTAGGTCAGCGGCGCTAGTAGGTGGCAGGTGGCTCCAGCCCCAGGCCTGGCTGGG
GTTCCCGGATACATGGGGACTCCCCGCCATGCAGCAGACCCGGGGCAAGGCGCGCGGGAACGAG
TATCAGCCGAGTAACATCAAACGCAAGCACAAGCATGGTTGGGTCCGGCGCTTGAGAACGCCAA
CCGGGGTCCAAGTCATTCTTCGTCGCATGCACAAGGGCCGAAAATCATTGAGCCATTGAGAAGG
GCGACGCTGCCGCCTGGACCCCTCATTAAATCATTTCCCTCGCTTAGCCTGTGGCTGTTTTTGT
GGAGAGCTGGAGAGCAGGACGACTGGGATTCGGACGGACATGAATATCCCTCACATTGGCCCAG
GGGAAGAAATCTGGTATTATACTGGAAAAAGGAGTGGAAGTCAGACCTTGCCCGGTGCTTTTTT
ACGCTTTTGAATTAGGAAGAATTTCGAACTTAACGCAACAGTCTAGTGACCAATTACCCACAAC
CCATCCTGCCCCCTCCTGAGATGCAAATCTCAGGCGTCAGATTATTCTGTAAATATTTCAGAAG
GCACCTCTTCAAGATAAGGGCTCTTTAATACATATTCACAAAACTTTTCACAGCTGAAAAAAAG
TTATCAGTTCTTTTAGTCATTGAAAGTCTAATAAATGTTCACATTTTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020939227	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000037421
	ENSSSCP00000037421.1
	ENSSSCP00005045637.1
	ENSSSCP00015009671.1
	ENSSSCP00025008392.1
	ENSSSCP00030026660.1
	ENSSSCP00035013108.1
	ENSSSCP00040024149.1
	ENSSSCP00045044648.1
	ENSSSCP00050038519.1
	ENSSSCP00055046853.1
	ENSSSCP00060011404.1
	ENSSSCP00065002538.1
	ENSSSCP00070027964.1

RefSeq Acc Id:	XP_020939227 ⟸ XM_021083568
- UniProtKB:	A0A287A119 (UniProtKB/TrEMBL), A0A4X1UFR4 (UniProtKB/TrEMBL), W5IDC1 (UniProtKB/TrEMBL), A0A8D1JE64 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAFLARSVGRLLDPVSRSAALVGGRWLQPQAWLGFPDTWGLPAMQQTRGKARGNEYQPSNIKRK HKHGWVRRLRTPTGVQVILRRMHKGRKSLSH hide sequence

RefSeq Acc Id:

ENSSSCP00000037421 ⟸ ENSSSCT00000042606

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000039295	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005045161	UniProtKB/TrEMBL
	ENSSSCG00015018724	UniProtKB/TrEMBL
	ENSSSCG00025015238	UniProtKB/TrEMBL
	ENSSSCG00030042001	UniProtKB/TrEMBL
	ENSSSCG00035025264	UniProtKB/TrEMBL
	ENSSSCG00040043273	UniProtKB/TrEMBL
	ENSSSCG00045036770	UniProtKB/TrEMBL
	ENSSSCG00050065880	UniProtKB/TrEMBL
	ENSSSCG00055029479	UniProtKB/TrEMBL
	ENSSSCG00060019826	UniProtKB/TrEMBL
	ENSSSCG00065004175	UniProtKB/TrEMBL
	ENSSSCG00070016998	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000042606	ENTREZGENE
	ENSSSCT00000042606.3	UniProtKB/TrEMBL
	ENSSSCT00005072902.1	UniProtKB/TrEMBL
	ENSSSCT00015024846.1	UniProtKB/TrEMBL
	ENSSSCT00025020435.1	UniProtKB/TrEMBL
	ENSSSCT00030058447.1	UniProtKB/TrEMBL
	ENSSSCT00035033252.1	UniProtKB/TrEMBL
	ENSSSCT00040057959.1	UniProtKB/TrEMBL
	ENSSSCT00045063320.1	UniProtKB/TrEMBL
	ENSSSCT00050089729.1	UniProtKB/TrEMBL
	ENSSSCT00055058545.1	UniProtKB/TrEMBL
	ENSSSCT00060026789.1	UniProtKB/TrEMBL
	ENSSSCT00065005716.1	UniProtKB/TrEMBL
	ENSSSCT00070033476.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.3980	UniProtKB/TrEMBL
InterPro	Ribosomal_L34	UniProtKB/TrEMBL
NCBI Gene	MRPL34	ENTREZGENE
PANTHER	39S RIBOSOMAL PROTEIN L34, MITOCHONDRIAL	UniProtKB/TrEMBL
	PTHR14503	UniProtKB/TrEMBL
Pfam	Ribosomal_L34	UniProtKB/TrEMBL
UniProt	A0A287A119	ENTREZGENE
	A0A4X1UFR4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1JE64	ENTREZGENE, UniProtKB/TrEMBL
	W5IDC1	ENTREZGENE
UniProt Secondary	A0A287A119	UniProtKB/TrEMBL
VGNC ID	VGNC:100173	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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