Muc4 (mucin 4, cell surface associated) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Muc4 (mucin 4, cell surface associated) Heterocephalus glaber
Analyze
Symbol: Muc4
Name: mucin 4, cell surface associated
RGD ID: 18905224
Description: ENCODES a protein that exhibits ErbB-2 class receptor binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); digestive tract development (ortholog); ASSOCIATED WITH allergic conjunctivitis (ortholog); Bile Duct Neoplasms (ortholog); biliary tract benign neoplasm (ortholog); FOUND IN apical plasma membrane (ortholog); extracellular space (ortholog); microvillus membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mucin-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473061,153,753 - 61,176,859 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Muc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473061,153,753 - 61,176,859 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MUC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383195,746,771 - 195,811,929 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3195,746,765 - 195,811,973 (-)EnsemblGRCh38hg38GRCh38
GRCh373195,473,642 - 195,538,800 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363196,959,307 - 197,023,545 (-)NCBINCBI36Build 36hg18NCBI36
Build 343196,963,223 - 197,027,458NCBI
Celera3194,080,875 - 194,081,499 (-)NCBICelera
Celera3193,972,388 - 193,997,732 (-)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3192,745,384 - 192,818,773 (-)NCBIHuRef
CHM1_13195,437,353 - 195,503,105 (-)NCBICHM1_1
T2T-CHM13v2.03198,546,126 - 198,620,098 (+)NCBIT2T-CHM13v2.0
Muc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391632,555,089 - 32,602,786 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1632,555,015 - 32,602,754 (+)EnsemblGRCm39 Ensembl
GRCm381632,735,886 - 32,782,391 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1632,735,886 - 32,782,391 (+)EnsemblGRCm38mm10GRCm38
MGSCv371632,735,972 - 32,782,477 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361632,656,022 - 32,701,973 (+)NCBIMGSCv36mm8
MGSCv361632,523,826 - 32,570,033 (+)NCBIMGSCv36mm8
Celera1633,215,985 - 33,261,178 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1623.3NCBI
Muc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81181,513,321 - 81,575,200 (-)NCBIGRCr8
mRatBN7.21168,008,245 - 68,053,242 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01171,242,973 - 71,285,217 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1171,243,334 - 71,284,939 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01174,327,777 - 74,369,829 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41169,830,276 - 69,858,366 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11169,887,864 - 69,915,763 (-)NCBI
Celera1167,453,205 - 67,496,554 (-)NCBICelera
Cytogenetic Map11q22NCBI
Muc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542012,228,801 - 12,274,840 (-)NCBIChiLan1.0ChiLan1.0
MUC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22193,640,920 - 193,716,442 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13193,650,060 - 193,721,162 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03193,050,895 - 193,114,931 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
MUC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13329,061,372 - 29,084,938 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3329,063,096 - 29,111,802 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3329,083,815 - 29,104,441 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03329,293,733 - 29,314,431 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13329,089,904 - 29,114,815 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03329,135,982 - 29,160,346 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03329,756,115 - 29,781,034 (-)NCBIUU_Cfam_GSD_1.0
Muc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602125,345,354 - 125,369,724 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936784515,608 - 539,915 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MUC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113134,192,412 - 134,248,435 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213143,786,443 - 143,842,402 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap13q41NCBI
LOC103242066
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11591,313,060 - 91,345,172 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604165,216,381 - 65,283,540 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004834676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01002886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_004834676   ⟹   XP_004834733
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473061,153,753 - 61,176,859 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004834733 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004834733   ⟸   XM_004834676


Additional Information

Database Acc Id Source(s)
NCBI Gene Muc4 ENTREZGENE