Nrtn (neurturin) - Rat Genome Database

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Gene: Nrtn (neurturin) Mus musculus
Analyze
Symbol: Nrtn
Name: neurturin
RGD ID: 731951
MGI Page MGI
Description: Enables growth factor activity. Involved in glial cell-derived neurotrophic factor receptor signaling pathway. Acts upstream of or within cell surface receptor protein tyrosine kinase signaling pathway and nerve development. Is active in extracellular space. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; integumental system; and sensory organ. Human ortholog(s) of this gene implicated in Hirschsprung's disease. Orthologous to human NRTN (neurturin).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: NTN
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,058,323 - 57,064,548 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,058,325 - 57,064,530 (-)EnsemblGRCm39 Ensembl
GRCm381756,751,323 - 56,757,548 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,751,325 - 56,757,530 (-)EnsemblGRCm38mm10GRCm38
MGSCv371756,890,748 - 56,896,953 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,436,449 - 56,442,654 (-)NCBIMGSCv36mm8
Celera1761,095,466 - 61,101,671 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.49NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,6-dinitrotoluene  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetaldehyde  (EXP)
acetamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
arachidonic acid  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (EXP)
carbamazepine  (EXP)
carmustine  (ISO)
chromium(6+)  (EXP)
ciguatoxin CTX1B  (EXP)
clofibrate  (EXP)
cocaine  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
folic acid  (EXP)
furan  (ISO)
genistein  (ISO)
maneb  (EXP)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
perfluorohexanesulfonic acid  (EXP)
phenethyl caffeate  (ISO)
phenethyl isothiocyanate  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP)
Soman  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
triacsin C  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
zearalenone  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axon  (IEA,ISO)
extracellular space  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mutation of the RET ligand, neurturin, supports multigenic inheritance in Hirschsprung disease. Doray B, etal., Hum Mol Genet. 1998 Sep;7(9):1449-52.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Neurturin-deficient mice develop dry eye and keratoconjunctivitis sicca. Song XJ, etal., Invest Ophthalmol Vis Sci. 2003 Oct;44(10):4223-9.
Additional References at PubMed
PMID:8889548   PMID:8945474   PMID:9182803   PMID:9192898   PMID:9286710   PMID:9334423   PMID:9448325   PMID:9576965   PMID:9703032   PMID:9786421   PMID:10067959   PMID:10069322  
PMID:10069331   PMID:10069332   PMID:10322636   PMID:10331972   PMID:10349636   PMID:10415156   PMID:10702420   PMID:11003834   PMID:11042159   PMID:11044402   PMID:11069590   PMID:11076861  
PMID:12433948   PMID:12477932   PMID:12668632   PMID:14610273   PMID:14681479   PMID:15019945   PMID:15489334   PMID:15748846   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17131407  
PMID:18175352   PMID:18216204   PMID:18417692   PMID:18420832   PMID:18554416   PMID:18657279   PMID:18799693   PMID:19176599   PMID:20064391   PMID:20139349   PMID:20534675   PMID:21508262  
PMID:21677750   PMID:21873635   PMID:22855506   PMID:23365243   PMID:23678134   PMID:24107967   PMID:24371813   PMID:24657391   PMID:24952961   PMID:25079320   PMID:25595789   PMID:25838128  
PMID:27162260   PMID:27396331   PMID:27545711   PMID:27571008   PMID:28031403   PMID:28705898   PMID:28825602   PMID:29031500   PMID:29176874   PMID:30361261   PMID:34592133   PMID:35087060  
PMID:35276096  


Genomics

Comparative Map Data
Nrtn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,058,323 - 57,064,548 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,058,325 - 57,064,530 (-)EnsemblGRCm39 Ensembl
GRCm381756,751,323 - 56,757,548 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,751,325 - 56,757,530 (-)EnsemblGRCm38mm10GRCm38
MGSCv371756,890,748 - 56,896,953 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,436,449 - 56,442,654 (-)NCBIMGSCv36mm8
Celera1761,095,466 - 61,101,671 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.49NCBI
NRTN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38195,805,067 - 5,828,324 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl195,805,067 - 5,828,324 (+)EnsemblGRCh38hg38GRCh38
GRCh37195,805,078 - 5,828,335 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,774,818 - 5,779,335 (+)NCBINCBI36Build 36hg18NCBI36
Build 34195,774,817 - 5,779,335NCBI
Celera195,762,840 - 5,767,355 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef195,583,694 - 5,588,209 (+)NCBIHuRef
CHM1_1195,823,836 - 5,828,353 (+)NCBICHM1_1
T2T-CHM13v2.0195,792,545 - 5,815,815 (+)NCBIT2T-CHM13v2.0
Nrtn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,669,099 - 1,674,957 (-)NCBIGRCr8
mRatBN7.291,581,860 - 1,587,835 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,581,975 - 1,583,102 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx92,016,109 - 2,017,236 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,365,227 - 7,366,354 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,321,307 - 6,322,434 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,299,881 - 10,306,599 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,305,470 - 10,306,597 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,297,308 - 9,303,679 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,933,647 - 6,934,774 (+)NCBICelera
Cytogenetic Map9q11NCBI
NRTN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,200,428 - 10,223,717 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,426,648 - 9,449,959 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,821,307 - 4,844,295 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
NRTN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,228,431 - 54,242,338 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2054,211,973 - 54,242,398 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,955,933 - 53,970,110 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,865,117 - 54,884,199 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,864,768 - 54,895,465 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,931,479 - 53,950,528 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02054,380,552 - 54,399,676 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,609,064 - 54,628,256 (-)NCBIUU_Cfam_GSD_1.0
Nrtn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,478,325 - 214,482,413 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,352,789 - 3,356,461 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,352,440 - 3,356,457 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRTN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl273,173,926 - 73,188,129 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1273,174,285 - 73,188,382 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,638,786 - 73,639,375 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NRTN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.165,444,514 - 5,458,769 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl65,444,878 - 5,458,617 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660812,577,380 - 2,600,530 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nrtn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248284,400,392 - 4,412,972 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248284,400,392 - 4,412,990 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nrtn
155 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:196
Count of miRNA genes:192
Interacting mature miRNAs:196
Transcripts:ENSMUST00000044752
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175175842585758612Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175175842585758612Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse
4142243Lfnq5_mlung function QTL 5 (mouse)Not determined5173897957534623Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173596629469966424Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173880562672805626Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173871288772712970Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173880562672805626Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined175020395784204103Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173678974370789743Mouse
14700692Cihvtq1_mcoxsackieviral infection heart viral titre QTL 1 (mouse)175000702870006995Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4053444774534623Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174093918774939187Mouse
26884390Skwq9_mskull length QTL 9, 10 week (mouse)174371089167806995Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse

Markers in Region
Nrtn  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17DUniSTS
cM Map1732.8UniSTS
cM Map1732.8UniSTS
Nrtn  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17DUniSTS
cM Map1732.8UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000044752   ⟹   ENSMUSP00000046512
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1757,058,325 - 57,064,530 (-)Ensembl
GRCm38.p6 Ensembl1756,751,325 - 56,757,530 (-)Ensembl
RefSeq Acc Id: NM_008738   ⟹   NP_032764
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391757,058,323 - 57,064,548 (-)NCBI
GRCm381756,751,323 - 56,757,548 (-)NCBI
MGSCv371756,890,748 - 56,896,953 (-)RGD
Celera1761,095,466 - 61,101,671 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006523801   ⟹   XP_006523864
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391757,058,323 - 57,061,711 (-)NCBI
GRCm381756,751,323 - 56,754,711 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_032764 (Get FASTA)   NCBI Sequence Viewer  
  XP_006523864 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC52954 (Get FASTA)   NCBI Sequence Viewer  
  AAH57993 (Get FASTA)   NCBI Sequence Viewer  
  EDL38200 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000046512
  ENSMUSP00000046512.6
GenBank Protein P97463 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_032764   ⟸   NM_008738
- Peptide Label: preproprotein
- UniProtKB: P97463 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006523864   ⟸   XM_006523801
- Peptide Label: isoform X1
- UniProtKB: P97463 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000046512   ⟸   ENSMUST00000044752

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97463-F1-model_v2 AlphaFold P97463 1-195 view protein structure

Promoters
RGD ID:13676542
Promoter ID:EPDNEW_M22420
Type:initiation region
Name:Nrtn_1
Description:Mus musculus neurturin , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381756,757,524 - 56,757,584EPDNEW
RGD ID:6828422
Promoter ID:MM_KWN:23914
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:NM_008738
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361756,896,776 - 56,897,276 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:108417 AgrOrtholog
Ensembl Genes ENSMUSG00000039481 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000044752 ENTREZGENE
  ENSMUST00000044752.6 UniProtKB/Swiss-Prot
Gene3D-CATH 2.10.90.10 UniProtKB/Swiss-Prot
InterPro Cystine-knot_cytokine UniProtKB/Swiss-Prot
  GDNF_fam UniProtKB/Swiss-Prot
  TGF-b_C UniProtKB/Swiss-Prot
KEGG Report mmu:18188 UniProtKB/Swiss-Prot
MGD MGI:108417 ENTREZGENE
NCBI Gene 18188 ENTREZGENE
PANTHER NEURTURIN UniProtKB/Swiss-Prot
  PTHR12173 UniProtKB/Swiss-Prot
Pfam TGF_beta UniProtKB/Swiss-Prot
PhenoGen Nrtn PhenoGen
PROSITE TGF_BETA_2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57501 UniProtKB/Swiss-Prot
UniProt NRTN_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE