Mpeg1 (macrophage expressed 1) - Rat Genome Database

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Gene: Mpeg1 (macrophage expressed 1) Heterocephalus glaber
Analyze
Symbol: Mpeg1
Name: macrophage expressed 1
RGD ID: 18904752
Description: ENCODES a protein that exhibits pore-forming activity (ortholog); wide pore channel activity (ortholog); INVOLVED IN antibacterial innate immune response (ortholog); antigen processing and presentation of exogenous peptide antigen (ortholog); antigen processing and presentation of exogenous peptide antigen via MHC class I (ortholog); ASSOCIATED WITH Experimental Liver Neoplasms (ortholog); Immunodeficiency 77 (ortholog); intellectual disability (ortholog); FOUND IN endolysosome (ortholog); phagocytic vesicle (ortholog); phagocytic vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: macrophage-expressed gene 1 protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248641,470,887 - 1,473,046 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248641,470,862 - 1,474,957 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Mpeg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248641,470,887 - 1,473,046 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248641,470,862 - 1,474,957 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MPEG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,208,510 - 59,212,927 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,208,510 - 59,212,927 (-)EnsemblGRCh38hg38GRCh38
GRCh371158,975,983 - 58,980,400 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,732,559 - 58,737,070 (-)NCBINCBI36Build 36hg18NCBI36
Celera1156,335,080 - 56,339,591 (-)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1155,321,954 - 55,326,538 (-)NCBIHuRef
CHM1_11158,841,473 - 58,846,067 (-)NCBICHM1_1
T2T-CHM13v2.01159,157,683 - 59,162,100 (-)NCBIT2T-CHM13v2.0
Mpeg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391912,438,134 - 12,442,649 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1912,438,143 - 12,442,649 (+)EnsemblGRCm39 Ensembl
GRCm381912,460,770 - 12,465,285 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1912,460,779 - 12,465,283 (+)EnsemblGRCm38mm10GRCm38
MGSCv371912,535,269 - 12,539,775 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361912,527,824 - 12,532,330 (+)NCBIMGSCv36mm8
Celera1913,124,779 - 13,129,283 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.72NCBI
Mpeg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81218,876,848 - 218,881,364 (+)NCBIGRCr8
mRatBN7.21209,452,176 - 209,456,692 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1209,452,133 - 209,458,855 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1217,826,816 - 217,831,286 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01224,758,435 - 224,762,905 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,581,271 - 217,585,741 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01228,724,559 - 228,729,054 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1228,724,900 - 228,727,160 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01235,886,584 - 235,891,070 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41215,387,912 - 215,390,172 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11215,546,341 - 215,548,602 (+)NCBI
Celera1206,869,012 - 206,873,482 (+)NCBICelera
Cytogenetic Map1q43NCBI
Mpeg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555113,785,019 - 3,787,154 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555113,783,200 - 3,787,300 (-)NCBIChiLan1.0ChiLan1.0
MPEG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2960,330,295 - 60,335,842 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11161,373,648 - 61,377,986 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01154,425,904 - 54,442,631 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11157,877,944 - 57,882,409 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1157,880,109 - 57,882,259 (-)Ensemblpanpan1.1panPan2
MPEG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11837,530,895 - 37,535,334 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1837,531,032 - 37,533,179 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1837,065,693 - 37,070,114 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01838,181,524 - 38,185,954 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11837,780,626 - 37,785,058 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01837,349,846 - 37,354,264 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01837,973,828 - 37,978,258 (+)NCBIUU_Cfam_GSD_1.0
Mpeg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494713,306,779 - 13,319,480 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365813,421,256 - 3,431,706 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365813,428,515 - 3,436,877 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC110259471
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1212,472,927 - 12,475,116 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004869725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01093797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000029157   ⟹   ENSHGLP00000028623
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248641,470,887 - 1,473,046 (+)Ensembl
RefSeq Acc Id: XM_004869725   ⟹   XP_004869782
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248641,470,862 - 1,474,957 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004869782 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028623
RefSeq Acc Id: XP_004869782   ⟸   XM_004869725
- UniProtKB: G5AP36 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000028623   ⟸   ENSHGLT00000029157


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000020947 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000029157 ENTREZGENE
InterPro MACPF UniProtKB/TrEMBL
  MPEG1 UniProtKB/TrEMBL
NCBI Gene Mpeg1 ENTREZGENE
PANTHER MACROPHAGE-EXPRESSED GENE 1 PROTEIN UniProtKB/TrEMBL
  MACROPHAGE-EXPRESSED GENE 1 PROTEIN UniProtKB/TrEMBL
Pfam MACPF UniProtKB/TrEMBL
PROSITE MACPF_2 UniProtKB/TrEMBL
SMART MACPF UniProtKB/TrEMBL
UniProt G5AP36 ENTREZGENE, UniProtKB/TrEMBL