Tubgcp5 (tubulin gamma complex component 5) - Rat Genome Database

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Gene: Tubgcp5 (tubulin gamma complex component 5) Heterocephalus glaber
Analyze
Symbol: Tubgcp5
Name: tubulin gamma complex component 5 (Ensembl:tubulin gamma complex associated protein 5)
RGD ID: 18904185
Description: ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN cytoplasmic microtubule organization (inferred); meiotic cell cycle (inferred); microtubule nucleation (inferred); ASSOCIATED WITH Angelman syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN cytosol (ortholog); gamma-tubulin ring complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gamma-tubulin complex component 5; tubulin gamma complex associated protein 5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248962,816,262 - 2,855,161 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248962,818,476 - 2,855,096 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tubgcp5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248962,816,262 - 2,855,161 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248962,818,476 - 2,855,096 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TUBGCP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381522,983,025 - 23,039,569 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1522,983,192 - 23,039,572 (-)EnsemblGRCh38hg38GRCh38
GRCh371522,833,499 - 22,890,043 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361520,384,836 - 20,425,332 (+)NCBINCBI36Build 36hg18NCBI36
Build 341520,384,942 - 20,425,331NCBI
Celera151,506,523 - 1,547,034 (-)NCBICelera
Cytogenetic Map15q11.2NCBI
HuRef151,146,027 - 1,186,592 (+)NCBIHuRef
CHM1_11522,782,441 - 22,822,933 (+)NCBICHM1_1
T2T-CHM13v2.01520,654,893 - 20,711,463 (-)NCBIT2T-CHM13v2.0
Tubgcp5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39755,443,873 - 55,481,207 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl755,443,902 - 55,481,425 (+)EnsemblGRCm39 Ensembl
GRCm38755,794,125 - 55,831,459 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl755,794,154 - 55,831,677 (+)EnsemblGRCm38mm10GRCm38
MGSCv37763,049,518 - 63,086,817 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36755,662,167 - 55,699,466 (+)NCBIMGSCv36mm8
Celera753,147,649 - 53,185,108 (+)NCBICelera
Cytogenetic Map7B5NCBI
cM Map733.42NCBI
Tubgcp5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81115,772,294 - 115,807,947 (+)NCBIGRCr8
mRatBN7.21106,636,526 - 106,672,175 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1106,636,526 - 106,672,175 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1112,033,249 - 112,068,931 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01120,505,138 - 120,540,800 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01113,754,053 - 113,789,728 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01114,186,853 - 114,222,516 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1114,186,853 - 114,222,516 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01115,192,961 - 115,228,228 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41107,171,399 - 107,206,919 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11107,249,811 - 107,285,247 (+)NCBI
Celera1100,846,430 - 100,882,021 (+)NCBICelera
Cytogenetic Map1q22NCBI
TUBGCP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21612,327,087 - 12,374,648 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11516,060,700 - 16,101,273 (-)NCBINHGRI_mPanPan1
PanPan1.11520,403,757 - 20,444,851 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1520,403,757 - 20,444,851 (+)Ensemblpanpan1.1panPan2
TUBGCP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1332,243,031 - 32,339,037 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl332,242,961 - 32,338,957 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha334,337,482 - 34,434,089 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0331,991,816 - 32,087,727 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl331,991,859 - 32,050,029 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1331,524,770 - 31,621,428 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0331,774,056 - 31,870,726 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0331,884,940 - 31,981,403 (+)NCBIUU_Cfam_GSD_1.0
Tubgcp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640120,333,117 - 120,367,909 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647138,181,252 - 38,216,306 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647138,180,670 - 38,215,972 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TUBGCP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1531,995,741 - 32,056,755 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11531,995,727 - 32,042,297 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TUBGCP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12653,497,298 - 53,541,339 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2653,506,340 - 53,541,319 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605436,221,921 - 36,265,380 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000012850   ⟹   ENSHGLP00000012713
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248962,816,262 - 2,855,161 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000012851   ⟹   ENSHGLP00000012714
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248962,818,736 - 2,855,043 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000012852   ⟹   ENSHGLP00000012715
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248962,852,289 - 2,855,013 (-)Ensembl
RefSeq Acc Id: XM_021250157   ⟹   XP_021105816
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248962,818,482 - 2,855,096 (-)NCBI
RefSeq Acc Id: XM_021250158   ⟹   XP_021105817
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248962,818,476 - 2,854,633 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021105816 (Get FASTA)   NCBI Sequence Viewer  
  XP_021105817 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012713
Reference Protein Sequences
RefSeq Acc Id: XP_021105817   ⟸   XM_021250158
- Peptide Label: isoform X2
- UniProtKB: G5AZH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105816   ⟸   XM_021250157
- Peptide Label: isoform X1
- UniProtKB: G5AZH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000012713   ⟸   ENSHGLT00000012850
RefSeq Acc Id: ENSHGLP00000012715   ⟸   ENSHGLT00000012852
RefSeq Acc Id: ENSHGLP00000012714   ⟸   ENSHGLT00000012851


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009094 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012850 ENTREZGENE
Gene3D-CATH Gamma-tubulin complex, C-terminal domain UniProtKB/TrEMBL
InterPro GCP UniProtKB/TrEMBL
  GCP_C UniProtKB/TrEMBL
  GCP_C_sf UniProtKB/TrEMBL
  GCP_N UniProtKB/TrEMBL
NCBI Gene Tubgcp5 ENTREZGENE
PANTHER GAMMA TUBULIN COMPLEX PROTEIN UniProtKB/TrEMBL
  GAMMA-TUBULIN COMPLEX COMPONENT 5 UniProtKB/TrEMBL
Pfam GCP_C_terminal UniProtKB/TrEMBL
  GCP_N_terminal UniProtKB/TrEMBL
UniProt G5AZH2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-21 Tubgcp5  tubulin gamma complex component 5  Tubgcp5  tubulin gamma complex associated protein 5  Symbol and/or name change 5135510 APPROVED