Armc2 (armadillo repeat containing 2) - Rat Genome Database

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Gene: Armc2 (armadillo repeat containing 2) Heterocephalus glaber
Analyze
Symbol: Armc2
Name: armadillo repeat containing 2
RGD ID: 18902485
Description: INVOLVED IN flagellated sperm motility (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); male infertility (ortholog); spermatogenic failure 38 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Armadillo repeat-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624916104,119 - 219,359 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624916104,856 - 219,341 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Armc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624916104,119 - 219,359 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624916104,856 - 219,341 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ARMC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386108,848,422 - 109,053,040 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6108,848,416 - 108,974,476 (+)EnsemblGRCh38hg38GRCh38
GRCh376109,169,625 - 109,295,679 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366109,276,312 - 109,402,045 (+)NCBINCBI36Build 36hg18NCBI36
Build 346109,276,317 - 109,401,877NCBI
Celera6109,915,511 - 110,041,258 (+)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6106,736,195 - 106,861,947 (+)NCBIHuRef
CHM1_16109,432,491 - 109,558,178 (+)NCBICHM1_1
T2T-CHM13v2.06110,025,813 - 110,236,991 (+)NCBIT2T-CHM13v2.0
Armc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391041,784,284 - 41,894,383 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1041,790,986 - 41,894,438 (-)EnsemblGRCm39 Ensembl
GRCm381041,908,463 - 42,018,382 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1041,914,990 - 42,018,442 (-)EnsemblGRCm38mm10GRCm38
MGSCv371041,634,796 - 41,738,188 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361041,603,408 - 41,665,159 (-)NCBIMGSCv36mm8
Celera1042,794,301 - 42,897,743 (-)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1022.77NCBI
Armc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82046,976,442 - 47,083,888 (-)NCBIGRCr8
mRatBN7.22045,395,859 - 45,501,808 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2045,394,127 - 45,504,819 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02046,766,467 - 46,872,009 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2046,765,881 - 46,871,946 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02048,445,848 - 48,551,252 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42045,886,018 - 45,985,709 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2054,455,022 - 54,563,888 (+)NCBICelera
Cytogenetic Map20q12NCBI
Armc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541133,921,459 - 34,021,375 (+)NCBIChiLan1.0ChiLan1.0
ARMC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25128,856,542 - 128,982,855 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16126,747,950 - 126,874,265 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06106,650,907 - 106,777,544 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16110,701,552 - 110,827,167 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6110,701,552 - 110,826,937 (+)Ensemblpanpan1.1panPan2
ARMC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11265,829,110 - 65,933,378 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1265,824,672 - 65,933,098 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1265,647,540 - 65,751,829 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01266,710,531 - 66,814,827 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1266,709,454 - 66,815,202 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11266,061,166 - 66,165,385 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01265,909,455 - 66,013,678 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01266,181,495 - 66,285,688 (+)NCBIUU_Cfam_GSD_1.0
Armc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946100,786,449 - 100,903,977 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365645,061,340 - 5,179,371 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARMC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl174,923,868 - 75,043,060 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1174,923,824 - 75,081,742 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2184,234,288 - 84,342,427 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARMC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11364,877,181 - 65,098,517 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1364,876,837 - 65,098,116 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604037,179,847 - 37,335,177 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000019225   ⟹   ENSHGLP00000019035
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624916104,119 - 219,359 (+)Ensembl
RefSeq Acc Id: XM_004873956   ⟹   XP_004874013
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624916104,856 - 219,329 (+)NCBI
RefSeq Acc Id: XM_021251542   ⟹   XP_021107201
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624916105,208 - 219,331 (+)NCBI
RefSeq Acc Id: XM_021251543   ⟹   XP_021107202
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624916104,856 - 210,032 (+)NCBI
RefSeq Acc Id: XM_021251544   ⟹   XP_021107203
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624916112,298 - 219,340 (+)NCBI
RefSeq Acc Id: XM_021251545   ⟹   XP_021107204
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624916112,298 - 219,341 (+)NCBI
RefSeq Acc Id: XM_021251546   ⟹   XP_021107205
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624916112,303 - 219,341 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004874013   ⟸   XM_004873956
- Peptide Label: isoform X1
- UniProtKB: G5B4I6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107202   ⟸   XM_021251543
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021107201   ⟸   XM_021251542
- Peptide Label: isoform X1
- UniProtKB: G5B4I6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107204   ⟸   XM_021251545
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021107203   ⟸   XM_021251544
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021107205   ⟸   XM_021251546
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000019035   ⟸   ENSHGLT00000019225


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013638 Ensembl, ENTREZGENE
  ENSHGLG00100005241 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000019225 ENTREZGENE
  ENSHGLT00100007076 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  ARMC2 UniProtKB/TrEMBL
KEGG Report hgl:101698010 UniProtKB/TrEMBL
NCBI Gene Armc2 ENTREZGENE
PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  PTHR21356 UniProtKB/TrEMBL
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt G5B4I6 ENTREZGENE, UniProtKB/TrEMBL