ARMC2 (armadillo repeat containing 2) - Rat Genome Database

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Gene: ARMC2 (armadillo repeat containing 2) Chlorocebus sabaeus
Analyze
Symbol: ARMC2
Name: armadillo repeat containing 2
RGD ID: 18637035
Description: INVOLVED IN flagellated sperm motility (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); male infertility (ortholog); spermatogenic failure 38 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: armadillo repeat-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11364,877,181 - 65,098,517 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1364,876,837 - 65,098,116 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604037,179,847 - 37,335,177 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARMC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11364,877,181 - 65,098,517 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1364,876,837 - 65,098,116 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604037,179,847 - 37,335,177 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ARMC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386108,848,422 - 109,053,040 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6108,848,416 - 108,974,476 (+)EnsemblGRCh38hg38GRCh38
GRCh376109,169,625 - 109,295,679 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366109,276,312 - 109,402,045 (+)NCBINCBI36Build 36hg18NCBI36
Build 346109,276,317 - 109,401,877NCBI
Celera6109,915,511 - 110,041,258 (+)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6106,736,195 - 106,861,947 (+)NCBIHuRef
CHM1_16109,432,491 - 109,558,178 (+)NCBICHM1_1
T2T-CHM13v2.06110,025,813 - 110,236,991 (+)NCBIT2T-CHM13v2.0
Armc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391041,784,284 - 41,894,383 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1041,790,986 - 41,894,438 (-)EnsemblGRCm39 Ensembl
GRCm381041,908,463 - 42,018,382 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1041,914,990 - 42,018,442 (-)EnsemblGRCm38mm10GRCm38
MGSCv371041,634,796 - 41,738,188 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361041,603,408 - 41,665,159 (-)NCBIMGSCv36mm8
Celera1042,794,301 - 42,897,743 (-)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1022.77NCBI
Armc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82046,976,442 - 47,083,888 (-)NCBIGRCr8
mRatBN7.22045,395,859 - 45,501,808 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2045,394,127 - 45,504,819 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02046,766,467 - 46,872,009 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2046,765,881 - 46,871,946 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02048,445,848 - 48,551,252 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42045,886,018 - 45,985,709 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2054,455,022 - 54,563,888 (+)NCBICelera
Cytogenetic Map20q12NCBI
Armc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541133,921,459 - 34,021,375 (+)NCBIChiLan1.0ChiLan1.0
ARMC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25128,856,542 - 128,982,855 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16126,747,950 - 126,874,265 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06106,650,907 - 106,777,544 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16110,701,552 - 110,827,167 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6110,701,552 - 110,826,937 (+)Ensemblpanpan1.1panPan2
ARMC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11265,829,110 - 65,933,378 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1265,824,672 - 65,933,098 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1265,647,540 - 65,751,829 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01266,710,531 - 66,814,827 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1266,709,454 - 66,815,202 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11266,061,166 - 66,165,385 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01265,909,455 - 66,013,678 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01266,181,495 - 66,285,688 (+)NCBIUU_Cfam_GSD_1.0
Armc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946100,786,449 - 100,903,977 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365645,061,340 - 5,179,371 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARMC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl174,923,868 - 75,043,060 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1174,923,824 - 75,081,742 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2184,234,288 - 84,342,427 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Armc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624916104,119 - 219,359 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624916104,856 - 219,341 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 10 24
Low 26 20 36
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000013280   ⟹   ENSCSAP00000011285
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1364,876,837 - 65,098,116 (-)Ensembl
RefSeq Acc Id: XM_008007401   ⟹   XP_008005592
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11364,877,181 - 65,007,758 (-)NCBI
Vero_WHO_p1.0NW_02366604037,179,847 - 37,335,177 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008007403   ⟹   XP_008005594
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11364,877,181 - 65,007,466 (-)NCBI
Vero_WHO_p1.0NW_02366604037,180,577 - 37,335,177 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008007406   ⟹   XP_008005597
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11364,877,181 - 65,001,115 (-)NCBI
Vero_WHO_p1.0NW_02366604037,180,577 - 37,328,917 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038001043   ⟹   XP_037856971
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604037,180,577 - 37,335,177 (-)NCBI
RefSeq Acc Id: XM_038001044   ⟹   XP_037856972
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604037,180,661 - 37,335,177 (-)NCBI
RefSeq Acc Id: XM_038001046   ⟹   XP_037856974
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604037,180,577 - 37,328,844 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008005592   ⟸   XM_008007401
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RRP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008005594   ⟸   XM_008007403
- Peptide Label: isoform X4
RefSeq Acc Id: XP_008005597   ⟸   XM_008007406
- Peptide Label: isoform X4
RefSeq Acc Id: ENSCSAP00000011285   ⟸   ENSCSAT00000013280
RefSeq Acc Id: XP_037856971   ⟸   XM_038001043
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RRP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037856974   ⟸   XM_038001046
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037856972   ⟸   XM_038001044
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RRP6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015188 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013280.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  ARMC2 UniProtKB/TrEMBL
NCBI Gene ARMC2 ENTREZGENE
PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  PTHR21356 UniProtKB/TrEMBL
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A0D9RRP6 ENTREZGENE, UniProtKB/TrEMBL