Lmod3 (leiomodin 3) - Rat Genome Database

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Gene: Lmod3 (leiomodin 3) Heterocephalus glaber
Analyze
Symbol: Lmod3
Name: leiomodin 3
RGD ID: 18901759
Description: ENCODES a protein that exhibits actin binding (inferred); actin monomer binding (inferred); tropomyosin binding (inferred); INVOLVED IN actin filament organization (inferred); actin nucleation (inferred); muscle contraction (inferred); ASSOCIATED WITH genetic disease (ortholog); nemaline myopathy 10 (ortholog); FOUND IN A band (inferred); cytoplasm (inferred); cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leiomodin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247733,688,478 - 3,703,179 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247733,686,669 - 3,702,986 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Lmod3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247733,688,478 - 3,703,179 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247733,686,669 - 3,702,986 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LMOD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38369,106,065 - 69,122,595 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl369,106,065 - 69,123,032 (-)EnsemblGRCh38hg38GRCh38
GRCh37369,155,216 - 69,171,746 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36369,238,730 - 69,254,407 (-)NCBINCBI36Build 36hg18NCBI36
Celera369,084,149 - 69,099,857 (-)NCBICelera
Cytogenetic Map3p14.1NCBI
HuRef369,157,117 - 69,172,666 (-)NCBIHuRef
CHM1_1369,107,257 - 69,122,963 (-)NCBICHM1_1
T2T-CHM13v2.0369,142,877 - 69,159,409 (-)NCBIT2T-CHM13v2.0
Lmod3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39697,215,491 - 97,230,137 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl697,215,495 - 97,229,720 (-)EnsemblGRCm39 Ensembl
GRCm38697,238,530 - 97,253,217 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl697,238,534 - 97,252,759 (-)EnsemblGRCm38mm10GRCm38
MGSCv37697,188,522 - 97,202,774 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36697,203,991 - 97,218,243 (-)NCBIMGSCv36mm8
Celera699,097,915 - 99,112,153 (-)NCBICelera
Cytogenetic Map6D3NCBI
cM Map644.92NCBI
Lmod3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84131,400,643 - 131,415,411 (-)NCBIGRCr8
mRatBN7.24129,843,964 - 129,858,684 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4129,843,970 - 129,858,244 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.04129,604,378 - 129,619,136 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4129,604,267 - 129,619,142 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04194,105,870 - 194,120,578 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44131,958,969 - 131,973,266 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4118,720,105 - 118,734,466 (-)NCBICelera
Cytogenetic Map4q34NCBI
Lmod3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542118,728,692 - 18,743,974 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542118,728,993 - 18,744,326 (+)NCBIChiLan1.0ChiLan1.0
LMOD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2269,061,374 - 69,077,880 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1369,066,161 - 69,082,667 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0369,042,870 - 69,058,704 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1370,409,700 - 70,424,652 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl370,410,288 - 70,424,702 (-)Ensemblpanpan1.1panPan2
LMOD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12022,612,916 - 22,629,207 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2022,612,946 - 22,629,214 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2022,587,390 - 22,603,662 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02022,638,734 - 22,655,016 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2022,638,724 - 22,655,023 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12022,333,633 - 22,349,893 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02022,675,875 - 22,692,165 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02022,746,668 - 22,762,961 (+)NCBIUU_Cfam_GSD_1.0
Lmod3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049421,510,935 - 1,520,742 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366031,510,330 - 1,520,911 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366031,510,330 - 1,520,741 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMOD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1350,541,414 - 50,554,696 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11350,541,407 - 50,554,346 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21355,672,243 - 55,685,067 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LMOD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12230,132,993 - 30,149,769 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2230,135,153 - 30,148,740 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041136,643,470 - 136,647,453 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000027108   ⟹   ENSHGLP00000026869
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247733,688,478 - 3,703,179 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000027109   ⟹   ENSHGLP00000026870
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247733,696,292 - 3,703,179 (-)Ensembl
RefSeq Acc Id: XM_004854184   ⟹   XP_004854241
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247733,686,669 - 3,702,446 (-)NCBI
RefSeq Acc Id: XM_021266024   ⟹   XP_021121683
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247733,686,669 - 3,702,555 (-)NCBI
RefSeq Acc Id: XM_021266025   ⟹   XP_021121684
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247733,686,669 - 3,702,979 (-)NCBI
RefSeq Acc Id: XM_021266027   ⟹   XP_021121686
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247733,686,669 - 3,702,986 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004854241 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121683 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121684 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121686 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026869
  ENSHGLP00100024851
GenBank Protein JAO03106 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021121686   ⟸   XM_021266027
- UniProtKB: A0A0P6JF47 (UniProtKB/TrEMBL),   G5AVQ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121684   ⟸   XM_021266025
- UniProtKB: A0A0P6JF47 (UniProtKB/TrEMBL),   G5AVQ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121683   ⟸   XM_021266024
- UniProtKB: A0A0P6JF47 (UniProtKB/TrEMBL),   G5AVQ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004854241   ⟸   XM_004854184
- UniProtKB: A0A0P6JF47 (UniProtKB/TrEMBL),   G5AVQ4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000026870   ⟸   ENSHGLT00000027109
Ensembl Acc Id: ENSHGLP00000026869   ⟸   ENSHGLT00000027108


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019110 Ensembl, ENTREZGENE
  ENSHGLG00100018245 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000027108 ENTREZGENE
  ENSHGLT00100025106 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro LRR_dom_sf UniProtKB/TrEMBL
  TMOD UniProtKB/TrEMBL
  WH2_dom UniProtKB/TrEMBL
KEGG Report hgl:101717678 UniProtKB/TrEMBL
NCBI Gene Lmod3 ENTREZGENE
PANTHER PTHR10901 UniProtKB/TrEMBL
  PTHR10901:SF3 UniProtKB/TrEMBL
Pfam Tropomodulin UniProtKB/TrEMBL
PROSITE WH2 UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
UniProt A0A0P6JF47 ENTREZGENE, UniProtKB/TrEMBL
  G5AVQ4 ENTREZGENE, UniProtKB/TrEMBL